Clone BO29931 Report

Search the DGRC for BO29931

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG5509-RA
Protein status:BO29931.pep: Imported from assembly
Sequenced Size:451

Clone Sequence Records

BO29931.complete Sequence

451 bp assembled on 2012-04-24

GenBank Submission: KX796615

> BO29931.complete
GAAGTTATCAGTCGACATGTCCCGATACTCCATGAAAGGCATCAATTTCG
ATGTTAAACGCGATATACAAAAGGTGGATGCTCGCACCTACGGATTCCTG
AAGACCAAGGGATCAGATACGCCGATGCCCACGGCTGCGAAGAGAATTAA
TCAATCGACGTTGATCGAAAGATTGAAATCCATAACATTGGCTGAAGTGG
TGGACGAGGAAGATCAGTCGTCTACGGGTTCAGTGGAATCGGGTAGCATG
TCCTTCGAAATGAAACGGAAGCTATTTGACGCAGCCGAGTTCACCATCAC
CCGAGGTCAGAAACTGAGTGACCTCACGCATGCCGCTGATGAGGGGATTA
ACTTTAGTCCGTACGATACCGGCAACAAGACACTCGAAGAAATCGAGGAA
TACTGCCGCGCCGTCAACATTAAGTTTGCCAAAGCAAGCTTTCTAGACCA
T

BO29931.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5509-RA 420 CG5509-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5509-RA 733 CG5509-RA 73..489 17..433 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12452536..12452952 17..433 2085 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:47:27 has no hits.

BO29931.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:44 Download gff for BO29931.complete
Subject Subject Range Query Range Percent Splice Strand
CG5509-RA 73..489 17..435 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:32 Download gff for BO29931.complete
Subject Subject Range Query Range Percent Splice Strand
CG5509-RA 73..489 17..435 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:25 Download gff for BO29931.complete
Subject Subject Range Query Range Percent Splice Strand
CG5509-RA 73..489 17..435 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:25 Download gff for BO29931.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12452536..12452952 17..435 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:32 Download gff for BO29931.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8278258..8278674 17..435 99   Plus

BO29931.pep Sequence

Translation from 16 to 451

> BO29931.pep
MSRYSMKGINFDVKRDIQKVDARTYGFLKTKGSDTPMPTAAKRINQSTLI
ERLKSITLAEVVDEEDQSSTGSVESGSMSFEMKRKLFDAAEFTITRGQKL
SDLTHAADEGINFSPYDTGNKTLEEIEEYCRAVNIKFAKASFLDH

BO29931.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5509-PA 139 CG5509-PA 1..139 1..139 700 100 Plus
I-t-PA 184 CG14719-PA 47..180 23..139 167 32.8 Plus