BO29933.complete Sequence
577 bp assembled on 2012-04-24
GenBank Submission: KX799265
> BO29933.complete
GAAGTTATCAGTCGACATGGACAGCGGCGAGGTGAAAATATCTTTGGAGG
ATTCCCCCAGCTCCGGGGAAAGTTTCGCCAGTACAACCAGTGGACCATGT
TGCGGTTCTGGCAGGGATTTGGATATTCAGGTGCATGAAAGCCATATAAA
AGACGACCAGTTCCCATCCAGGGCCACCAGTGAATTACAAGAATCCAAAA
AATCGAACAAGAAATGTTCCAGCGATCTTTCGACAGAGAATAGCTATGCT
GCCAACAAAAATGTAGCTGAAGGCCTAATGGATATAGCTTTGCTTTCGGC
GAATGCGAATCAGTTGCGATTCCTGATCACCTATAACGACAAGGCTTCCA
CGTACATATACAGCATGATTATGGTGATACTTTCCCTGGTGCTGCAGCTT
TTAGTTGGCATAATGCTGATCTTTAAACGACGTCTCAAGCGATTTAGGAA
CCGAAGTTACGAAAGAACCAACGATCTGCTCGTAATGGGAGTTTTCATGA
TCACAGTGATCAACATTCTGCTGGCCGCATTTACCACAACGGATGGAGGA
GGCAGTCATGCAAGCTTTCTAGACCAT
BO29933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijB-RA | 546 | CG11637-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijB-RA | 741 | CG11637-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18892383..18892639 | 17..273 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 18892739..18892895 | 271..427 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 18892949..18893080 | 428..559 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:47:42 has no hits.
BO29933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:46 Download gff for
BO29933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11637-RA | 1..543 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:36 Download gff for
BO29933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijB-RA | 1..543 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:30 Download gff for
BO29933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijB-RA | 1..543 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:30 Download gff for
BO29933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18892383..18892638 | 17..272 | 100 | -> | Plus |
| 3L | 18892741..18892895 | 273..427 | 100 | -> | Plus |
| 3L | 18892949..18893080 | 428..561 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:36 Download gff for
BO29933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18885483..18885738 | 17..272 | 100 | -> | Plus |
| arm_3L | 18885841..18885995 | 273..427 | 100 | -> | Plus |
| arm_3L | 18886049..18886180 | 428..561 | 98 | | Plus |
BO29933.pep Sequence
Translation from 16 to 577
> BO29933.pep
MDSGEVKISLEDSPSSGESFASTTSGPCCGSGRDLDIQVHESHIKDDQFP
SRATSELQESKKSNKKCSSDLSTENSYAANKNVAEGLMDIALLSANANQL
RFLITYNDKASTYIYSMIMVILSLVLQLLVGIMLIFKRRLKRFRNRSYER
TNDLLVMGVFMITVINILLAAFTTTDGGGSHASFLDH
BO29933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijB-PA | 181 | CG11637-PA | 1..181 | 1..181 | 904 | 100 | Plus |
| NijC-PF | 133 | CG14394-PF | 14..114 | 75..172 | 192 | 37.9 | Plus |
| NijC-PD | 138 | CG14394-PD | 19..119 | 75..172 | 192 | 37.9 | Plus |
| NijA-PD | 225 | CG6449-PD | 110..211 | 75..173 | 190 | 37.3 | Plus |
| NijA-PC | 229 | CG6449-PC | 114..215 | 75..173 | 190 | 37.3 | Plus |
