Clone BO29937 Report

Search the DGRC for BO29937

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCheA87a-RA
Protein status:BO29937.pep: Imported from assembly
Sequenced Size:583

Clone Sequence Records

BO29937.complete Sequence

583 bp assembled on 2012-04-24

GenBank Submission: KX798892

> BO29937.complete
GAAGTTATCAGTCGACATGGGCTCCTCTTTATGTCCCGTCTCTTATCTGG
CGGTCTTGGCAATTATCGTCCTAACCAGTAATATTACAGTCCAGGCTAAA
AGGACATTCAGGATCCAGAAATTAGAAAAGGTGACTGAGGATACCTCATA
TCTGCGCAGTCGTCTGCGTATCGCTGAGTCCGAGGAAAATGAGTTGAAAG
TCAGCGGATATCTCGATCTGAATCAACGACTCGACAATGATTGGACGGTT
GTGCTTAAGGTTTCAAGATCCCCGGATAGCGATGGAGACTACGAGAAGGT
TTTGACATTCGAAATGCAGCTTTGCGACTTTATGAAGAGCTACTACAAGG
ATATCTTTTACGAACGGATCAAGGAATACTCGAATGCCCCGCATCCCAGC
AGCTGTCCTCTGCCCAAGGAACGCTATGTACTAGAGGACTATCCCTTCAA
TGTCAAGTTGCTCAAAAAGCTGATGAGTCCGGGCTTCTATCGCATAAAGT
ATACCCTCAAGAATGAAGAGACTAAAATATTATCGTACGTTCTGGATTTG
GAGTTGGAGGAGAACGCAAGCTTTCTAGACCAT

BO29937.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CheA87a-RA 552 CG14379-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CheA87a-RA 643 CG14379-RA 22..570 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13369955..13370273 247..565 1595 100 Plus
3R 32079331 3R 13369669..13369901 17..249 1165 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:48:16 has no hits.

BO29937.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:48 Download gff for BO29937.complete
Subject Subject Range Query Range Percent Splice Strand
CheA87a-RA 1..549 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:41 Download gff for BO29937.complete
Subject Subject Range Query Range Percent Splice Strand
CheA87a-RA 22..570 17..567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:43 Download gff for BO29937.complete
Subject Subject Range Query Range Percent Splice Strand
CheA87a-RA 22..570 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:43 Download gff for BO29937.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13369669..13369899 17..247 100 -> Plus
3R 13369956..13370273 248..567 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:41 Download gff for BO29937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9195391..9195621 17..247 100 -> Plus
arm_3R 9195678..9195995 248..567 99   Plus

BO29937.pep Sequence

Translation from 16 to 583

> BO29937.pep
MGSSLCPVSYLAVLAIIVLTSNITVQAKRTFRIQKLEKVTEDTSYLRSRL
RIAESEENELKVSGYLDLNQRLDNDWTVVLKVSRSPDSDGDYEKVLTFEM
QLCDFMKSYYKDIFYERIKEYSNAPHPSSCPLPKERYVLEDYPFNVKLLK
KLMSPGFYRIKYTLKNEETKILSYVLDLELEENASFLDH

BO29937.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CheA87a-PA 183 CG14379-PA 1..183 1..183 939 100 Plus