Clone BO29938 Report

Search the DGRC for BO29938

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptGstE4-RA
Protein status:BO29938.pep: Imported from assembly
Sequenced Size:700

Clone Sequence Records

BO29938.complete Sequence

700 bp assembled on 2012-04-24

GenBank Submission: KX794027

> BO29938.complete
GAAGTTATCAGTCGACATGGGTAAGATATCGCTATACGGCCTGGACGCAA
GTCCGCCAACACGGGCATGTCTGCTCACCCTGAAGGCACTGGATCTGCCC
TTCGAATTTGTGTTCGTCAATCTGTTCGAGAAGGAGAACTTTAGCGAGGA
CTTCTCGAAGAAGAATCCACAGCACACGGTGCCACTGCTGCAGGACGATG
ATGCCTGCATCTGGGACTCCCATGCCATCATGGCGTATCTGGTGGAAAAG
TACGCGCCAAGCGATGAGCTCTATCCCAAGGATCTGCTGCAGCGTGCCAA
AGTGGACCAATTGATGCACTTCGAGTCGGGTGTCATCTTCGAGTCTGCCC
TAAGGAGACTCACCCGTCCGGTGCTCTTCTTCGGCGAGCCCACCTTGCCC
CGCAATCAGGTGGATCACATCCTTCAGGTCTATGATTTCGTAGAGACCTT
TCTCGATGATCACGACTTCGTGGCCGGCGATCAGTTGACCATAGCCGATT
TCAGCATCGTATCGACCATCACCTCGATTGGTGTTTTCCTGGAGCTGGAT
CCGGCCAAGTACCCTAAGATTGCCGCCTGGCTGGAGAGGCTTAAGGAGCT
GCCCTACTACGAGGAGGCCAATGGCAAAGGAGCTGCCCAGTTCGTGGAGC
TCTTGAGGTCCAAAAACTTCACCATAGTTTCGGCAAGCTTTCTAGACCAT

BO29938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
GstE4-RA 669 CG17525-PA 1..666 17..682 3330 100 Plus
GstE10-RB 723 CG17522-PB 145..318 161..334 270 77 Plus
GstE10-RA 723 CG17522-PA 145..318 161..334 270 77 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
GstE4-RA 839 CG17525-RA 28..693 17..682 3330 100 Plus
GstE10-RB 1134 CG17522-RB 451..624 161..334 270 77 Plus
GstE10-RA 889 CG17522-RA 206..379 161..334 270 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18403275..18403940 17..682 3330 100 Plus
2R 25286936 2R 18397148..18397321 334..161 270 77 Minus
2R 25286936 2R 18404778..18404861 161..244 210 83.3 Plus
2R 25286936 2R 18407095..18407279 157..341 205 74.1 Plus
Blast to na_te.dros performed on 2014-11-28 04:48:24 has no hits.

BO29938.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:49 Download gff for BO29938.complete
Subject Subject Range Query Range Percent Splice Strand
GstE4-RA 1..666 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:43 Download gff for BO29938.complete
Subject Subject Range Query Range Percent Splice Strand
GstE4-RA 28..693 17..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:48 Download gff for BO29938.complete
Subject Subject Range Query Range Percent Splice Strand
GstE4-RA 28..693 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:48 Download gff for BO29938.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18403275..18403940 17..684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:43 Download gff for BO29938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14290780..14291445 17..684 99   Plus

BO29938.pep Sequence

Translation from 16 to 700

> BO29938.pep
MGKISLYGLDASPPTRACLLTLKALDLPFEFVFVNLFEKENFSEDFSKKN
PQHTVPLLQDDDACIWDSHAIMAYLVEKYAPSDELYPKDLLQRAKVDQLM
HFESGVIFESALRRLTRPVLFFGEPTLPRNQVDHILQVYDFVETFLDDHD
FVAGDQLTIADFSIVSTITSIGVFLELDPAKYPKIAAWLERLKELPYYEE
ANGKGAAQFVELLRSKNFTIVSASFLDH

BO29938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
GstE4-PA 222 CG17525-PA 1..222 1..222 1151 100 Plus
GstE7-PA 223 CG17531-PA 1..222 1..222 727 63.2 Plus
GstE8-PB 222 CG17533-PB 1..219 1..219 707 58.9 Plus
GstE8-PA 222 CG17533-PA 1..219 1..219 707 58.9 Plus
GstE5-PA 222 CG17527-PA 1..222 1..222 704 57.7 Plus