Clone BO29939 Report

Search the DGRC for BO29939

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG17652-RA
Protein status:BO29939.pep: Imported from assembly
Sequenced Size:766

Clone Sequence Records

BO29939.complete Sequence

766 bp assembled on 2012-04-24

GenBank Submission: KX798845

> BO29939.complete
GAAGTTATCAGTCGACATGAAAATATCTCGTTTTAAGAAGTCGCACAAAA
CTCTGGTGTTTTTTGCCAGCAATTTCGACTACCGGGAACCCTACCAAGTG
CTAATTGATGCCACCTTTTGCCAAGCAGCCCTTCAGCAAAAGATTGGCAT
AGATGAGCAGATTAAAAAGTACTTCCAGTGCGGCGTTAAGCTACTGACCA
CCCAGTGTGTTATTCTGGAGTCGGAATCCCTGGGTGCTCCTCTCACTGGA
GCCACATCCATCGTCAAGCGATTCCATGTCCACAAATGCGGACACGAAGG
AAAACCAGTCCCCGCTTCCGAATGCATCAAATCGATGACCAAAGACAATC
GCTATGTGGTTGCCTCGCAAGATCGTCTGCTGCAGGAGAGTCTTCGCAAG
ATTCCCGGACGTTGTCTGCTCTATCTGCACAAAGCCACTCCCGTCTTGGA
AGCACCATCTAAAGCCTCCAAGAAGTGGGTGCAACGACGGGCCAAAAACC
TAATGCTGGGCAAACAGGTCGAGAAAATCGACTACATGAAGGAGAAGCAG
GGACTGAAGCCAGCTGAAACTGCAGTCAAACCCAAGAAGCACAAAGGGCC
CAAGAACCCCAATCCATTGTCCTGCAAGAAGAGCAAAAAGGACAAGGCGA
AGCAACAGCTCAAAGGAGTTGAGCAGACCGCAATAACCAAGGCGAAACGA
AAACGAGTCAAGATCCCAGCGCACGTCAAGGCAGCGCTAGGAAAAGATGC
AAGCTTTCTAGACCAT

BO29939.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17652-RB 735 CG17652-PB 1..732 17..748 3660 100 Plus
CG17652-RA 735 CG17652-PA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17652-RB 1198 CG17652-RB 93..825 16..748 3665 100 Plus
CG17652-RA 873 CG17652-RA 93..825 16..748 3665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1731406..1731817 748..337 2060 100 Minus
2L 23513712 2L 1731880..1732082 337..135 1015 100 Minus
2L 23513712 2L 1732144..1732264 136..16 605 100 Minus
Blast to na_te.dros performed 2014-11-28 04:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5346..5383 568..605 109 76.3 Plus

BO29939.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:59 Download gff for BO29939.complete
Subject Subject Range Query Range Percent Splice Strand
CG17652-RA 94..825 17..750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:18 Download gff for BO29939.complete
Subject Subject Range Query Range Percent Splice Strand
CG17652-RA 94..825 17..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:06 Download gff for BO29939.complete
Subject Subject Range Query Range Percent Splice Strand
CG17652-RA 94..825 17..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:06 Download gff for BO29939.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1731404..1731816 338..750 99 <- Minus
2L 1731880..1732080 137..337 100 <- Minus
2L 1732144..1732263 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:18 Download gff for BO29939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1731404..1731816 338..750 99 <- Minus
arm_2L 1731880..1732080 137..337 100 <- Minus
arm_2L 1732144..1732263 17..136 100   Minus

BO29939.pep Sequence

Translation from 16 to 766

> BO29939.pep
MKISRFKKSHKTLVFFASNFDYREPYQVLIDATFCQAALQQKIGIDEQIK
KYFQCGVKLLTTQCVILESESLGAPLTGATSIVKRFHVHKCGHEGKPVPA
SECIKSMTKDNRYVVASQDRLLQESLRKIPGRCLLYLHKATPVLEAPSKA
SKKWVQRRAKNLMLGKQVEKIDYMKEKQGLKPAETAVKPKKHKGPKNPNP
LSCKKSKKDKAKQQLKGVEQTAITKAKRKRVKIPAHVKAALGKDASFLDH

BO29939.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17652-PB 244 CG17652-PB 1..244 1..244 1262 100 Plus
CG17652-PA 244 CG17652-PA 1..244 1..244 1262 100 Plus