BO29944.complete Sequence
808 bp assembled on 2012-04-24
GenBank Submission: KX799626
> BO29944.complete
GAAGTTATCAGTCGACATGGATCGTCTGCAGCAGGTCGGCGTTCAGCAGT
TGGGTGATCTGAAGCGTGTTTTCACCCGGGAATGGCCAAAATACTGCAAG
GAGTACTACTGCCTGGACACGTTTCTGGAGCTATATAAAAAGGACGATCA
GCTGAAGGATGTGCAAGTCTATGCTCTTCCCAATCTAGAGCTCGGAATAT
TTGTGATCGTGGATCACTATCAGATATTTGTGGGCTTCCTGGAAGCTGAA
CAATCAGAAAGCCTTTTCAAGGAGTCCTTACTCAAGTTTAAGCTCTATGG
AGGCGAACAGTTCGCCTCAATGCCAAAAAGGTATTTCAATGTTGCCAACG
ACATTATTCAAGCGAAGAATCTGAAACTAGATCTCGACTGTGTAACACTT
TCCCTGGTCTTGAGCAAAGAGGAAGCCCTGCTTTTTCAAGTAGAACCTCC
AGCCGGATTTTCCCTTAAGCCGGTAGATATAGACGATGCTCAGGTGATTA
ATGATCAATGGGAATGGAGTGAGCCGGATTCCCTTTCCGTGGTCCGCCGT
CAAATTCTGGCTCCAGATGGCTTATTGGCAGTCCTTCAGGTCAAGACGAC
CTACAAACGCAGAGGCTTCGGCCAACTGATTGTGAAGGAATTTGCGAGAC
AAGAGGCTCTGCTGGGACGCGATACAATCACCGAAGTGGTTCCGGAAAAC
AAGGCATCCTTGGGCCTGTTCACCAAACTGGGCTTTAAAATCAACGACCA
GTGTCACTGGCTGATGACGGAGCCGCCAAAAGGAGTTCGAGCAAGCTTTC
TAGACCAT
BO29944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15155-RA | 777 | CG15155-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
| CG15155-RB | 774 | CG15155-PB | 1..771 | 17..790 | 3790 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15155-RA | 909 | CG15155-RA | 11..789 | 12..790 | 3880 | 99.9 | Plus |
| CG15155-RB | 906 | CG15155-RB | 11..786 | 12..790 | 3800 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18155119..18155352 | 211..444 | 1170 | 100 | Plus |
| 2L | 23513712 | 2L | 18155591..18155822 | 559..790 | 1160 | 100 | Plus |
| 2L | 23513712 | 2L | 18154861..18155061 | 12..212 | 990 | 99.5 | Plus |
| 2L | 23513712 | 2L | 18155415..18155529 | 445..559 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:48:36 has no hits.
BO29944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:49 Download gff for
BO29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15155-RA | 3..776 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:45 Download gff for
BO29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15155-RA | 16..789 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:54 Download gff for
BO29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15155-RA | 16..789 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:54 Download gff for
BO29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18155120..18155352 | 212..444 | 100 | -> | Plus |
| 2L | 18155415..18155528 | 445..558 | 100 | -> | Plus |
| 2L | 18155591..18155822 | 559..792 | 99 | | Plus |
| 2L | 18154866..18155060 | 17..211 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:45 Download gff for
BO29944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18155415..18155528 | 445..558 | 100 | -> | Plus |
| arm_2L | 18155591..18155822 | 559..792 | 99 | | Plus |
| arm_2L | 18154866..18155060 | 17..211 | 100 | -> | Plus |
| arm_2L | 18155120..18155352 | 212..444 | 100 | -> | Plus |
BO29944.pep Sequence
Translation from 16 to 808
> BO29944.pep
MDRLQQVGVQQLGDLKRVFTREWPKYCKEYYCLDTFLELYKKDDQLKDVQ
VYALPNLELGIFVIVDHYQIFVGFLEAEQSESLFKESLLKFKLYGGEQFA
SMPKRYFNVANDIIQAKNLKLDLDCVTLSLVLSKEEALLFQVEPPAGFSL
KPVDIDDAQVINDQWEWSEPDSLSVVRRQILAPDGLLAVLQVKTTYKRRG
FGQLIVKEFARQEALLGRDTITEVVPENKASLGLFTKLGFKINDQCHWLM
TEPPKGVRASFLDH
BO29944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15155-PA | 258 | CG15155-PA | 1..258 | 1..258 | 1337 | 100 | Plus |
| CG15155-PB | 257 | CG15155-PB | 1..257 | 1..258 | 1321 | 99.6 | Plus |
| CG5783-PA | 287 | CG5783-PA | 4..279 | 3..256 | 467 | 36.2 | Plus |
| CG17681-PA | 293 | CG17681-PA | 13..289 | 9..261 | 255 | 25.1 | Plus |
| CG12560-PB | 278 | CG12560-PB | 135..276 | 127..248 | 192 | 32.4 | Plus |
