Clone BO29946 Report

Search the DGRC for BO29946

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG32040-RA
Protein status:BO29946.pep: Imported from assembly
Sequenced Size:973

Clone Sequence Records

BO29946.complete Sequence

973 bp assembled on 2012-04-24

GenBank Submission: KX794389

> BO29946.complete
GAAGTTATCAGTCGACATGACAAGTCGCTGGCTGCTATTAAGTTTGCTAC
TCTATTGGGGTAGCCAGGAGGTCTCCTCGGGTGTGATGGACAACTTTGGC
GATGGCTTGAAAATGGCCGGGCAAATGTTTGGCATCAATACGGCAGCAGA
TGTGGCAAATCTGGTAGCCAAGGCATTCTCCGGCAATTCTATGGCAAATG
TACCCAATTTGATTAGCTACGCCCAGAGTGGATTCCAAGGGCTGCGGCAA
AACAATGGTGCGGATGAACAGGAGGAGGATCAATCGGAGCAGCAATCGGA
AACGGAAAATGTCCAGGAAGAACCTCCGGTGGAGAACACAACCCGAAAAC
CTCCTCCGATAACCTTCGATTCCGGGCAAATGCTCTCCAATATGTTGAGA
ATGGTGGGTTTTGATACGCGGAAAATAGGAGCCCTAGCCTTAAATGCATT
GATTATGGTTGCTCAGGCGATTGGTAGCTCCCTGCTGCAGGTTACTCGGG
GAGGTGGAACATCTTTAATCGATGCTACGGAATCCCTGTATGAACCCAGC
GATCATCGACCACGTTCCCTATCCATGGGATCGCCCATCGATTGGTTTAT
GCAACGTACAGATCGCTATAGCAAACGACTAATCAAGGATATCATGGATC
GGGATTTGCCCGACTACATACTAGACATGATCGAAGCCAAGGAACAACCC
GAGGAGGGTAAAACCGCTGGTTGCCTAAAGCTTCTGATGTGCAAGGGTCA
ACCAATCATTTGGGGAATGCAGGAATCGTTAAAGAAACGCCTGGCTGGAG
AACCTGAAGAGCCCGATGATAACGATAGCTACTTTAACAAGAAAATCTTA
TTTAAACACTTGCCCAGTCTTGAGGATTTTAGGAACCATAGTGCTAGCTG
TGAAGTCAAATACCACGAGGAGTGCCCCAAGAATGCAACAACGGGAAGCT
ATTTTGCAAGCTTTCTAGACCAT

BO29946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32040-RA 942 CG32040-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32040-RA 1364 CG32040-RA 304..1242 17..955 4695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9354849..9355335 469..955 2435 100 Plus
3L 28110227 3L 9354336..9354788 17..469 2265 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:53:15 has no hits.

BO29946.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:04 Download gff for BO29946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32040-RA 304..1242 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:40 Download gff for BO29946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32040-RA 304..1242 17..957 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:40 Download gff for BO29946.complete
Subject Subject Range Query Range Percent Splice Strand
CG32040-RA 304..1242 17..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:40 Download gff for BO29946.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9354336..9354788 17..469 100 -> Plus
3L 9354850..9355335 470..957 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:40 Download gff for BO29946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9347436..9347888 17..469 100 -> Plus
arm_3L 9347950..9348435 470..957 99   Plus

BO29946.pep Sequence

Translation from 16 to 973

> BO29946.pep
MTSRWLLLSLLLYWGSQEVSSGVMDNFGDGLKMAGQMFGINTAADVANLV
AKAFSGNSMANVPNLISYAQSGFQGLRQNNGADEQEEDQSEQQSETENVQ
EEPPVENTTRKPPPITFDSGQMLSNMLRMVGFDTRKIGALALNALIMVAQ
AIGSSLLQVTRGGGTSLIDATESLYEPSDHRPRSLSMGSPIDWFMQRTDR
YSKRLIKDIMDRDLPDYILDMIEAKEQPEEGKTAGCLKLLMCKGQPIIWG
MQESLKKRLAGEPEEPDDNDSYFNKKILFKHLPSLEDFRNHSASCEVKYH
EECPKNATTGSYFASFLDH

BO29946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32040-PA 313 CG32040-PA 1..313 1..313 1631 100 Plus