Clone BO29947 Report

Search the DGRC for BO29947

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCpr49Ab-RA
Protein status:BO29947.pep: Imported from assembly
Sequenced Size:811

Clone Sequence Records

BO29947.complete Sequence

811 bp assembled on 2012-04-24

GenBank Submission: KX798020

> BO29947.complete
GAAGTTATCAGTCGACATGTGGCTGCGCGTAGCGATCGTTCTAGTTATAG
CCCTTGCGGCTGCCGTTCTGGCCCAAAACGATGGACGGTATCGTCCTCCG
CCGACAAGGGCGAGTGCCGGAGATGGTAGGTACCGCGGCGGTAACGATGG
ACGTTATCGCGGTGGAGGCGATGGACGATACTCGGGTGGCAACGATGGAC
GCTACGTGCACATGGACAACAAGTACAAGCACGACGATCGTCCTGGTGGG
GATTACTCCGGCGATGCAGGTCGCTATGTGGGGGACAAGAACAGGGGTGG
TGGAGGCGGTGGTGGCGGTGGTGGTGGTGGTGGAGGTGGATCCGGGGCAG
GTGGTGGTGGAGCAGCAGTTGTAGTGCCCAGAACCTCAGCCAGGCCTCAA
CCAAGACCCACCACTGCAGCGCCGCCGGCTATTGCCGATCCAACTGCCAA
TCTTCCCAAGGGACGTGGCACCGGCGAAGGAGGCAACGGATGGGCCATCA
TCCGCCAGGAAGACGATGTGGAGGTGGATGGCTATCACTATCTTTGGGAA
ACTGAGAACGGCATCTTAGGCGAGGAAAGTGGACGCATCGAAAAGCTGAC
CGAGGAGGAGGGACTTCGTTCCAAGGGATTCTACGAGTACACTGGACCCG
ACGGCATCCTCTACCGCGTGGACTATGTAGCAGACGACAATGGCTTTGTG
CCAAGTGCCGCCCACCTGCCCACAGCGCCACCACCACCGCCCTATGTGGA
AAAGTTACTCGCCTTTTTGGAAGCAAATGCCAAGACGAAGAAAGCAAGCT
TTCTAGACCAT

BO29947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ab-RA 780 CG30042-PA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ab-RA 852 CG30042-RA 18..794 17..793 3885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12378527..12379041 34..548 2560 99.8 Plus
2R 25286936 2R 12379089..12379338 544..793 1250 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:47:50 has no hits.

BO29947.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:46 Download gff for BO29947.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ab-RA 1..777 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:38 Download gff for BO29947.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ab-RA 18..794 17..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:33 Download gff for BO29947.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ab-RA 18..794 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:33 Download gff for BO29947.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12378457..12378474 17..34 100 -> Plus
2R 12378528..12379036 35..543 100 -> Plus
2R 12379089..12379338 544..795 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:38 Download gff for BO29947.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8265962..8265979 17..34 100 -> Plus
arm_2R 8266033..8266541 35..543 100 -> Plus
arm_2R 8266594..8266843 544..795 99   Plus

BO29947.pep Sequence

Translation from 16 to 811

> BO29947.pep
MWLRVAIVLVIALAAAVLAQNDGRYRPPPTRASAGDGRYRGGNDGRYRGG
GDGRYSGGNDGRYVHMDNKYKHDDRPGGDYSGDAGRYVGDKNRGGGGGGG
GGGGGGGGSGAGGGGAAVVVPRTSARPQPRPTTAAPPAIADPTANLPKGR
GTGEGGNGWAIIRQEDDVEVDGYHYLWETENGILGEESGRIEKLTEEEGL
RSKGFYEYTGPDGILYRVDYVADDNGFVPSAAHLPTAPPPPPYVEKLLAF
LEANAKTKKASFLDH

BO29947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ab-PA 259 CG30042-PA 1..259 1..259 1409 100 Plus
Cpr47Ef-PD 601 CG13214-PD 5..226 2..249 308 34.9 Plus
Cpr47Ef-PC 612 CG13214-PC 5..226 2..249 308 34.9 Plus
Cpr49Ac-PG 315 CG8502-PG 11..252 5..265 268 30.5 Plus
Cpr49Ac-PF 315 CG8502-PF 11..252 5..265 268 30.5 Plus