BO29947.complete Sequence
811 bp assembled on 2012-04-24
GenBank Submission: KX798020
> BO29947.complete
GAAGTTATCAGTCGACATGTGGCTGCGCGTAGCGATCGTTCTAGTTATAG
CCCTTGCGGCTGCCGTTCTGGCCCAAAACGATGGACGGTATCGTCCTCCG
CCGACAAGGGCGAGTGCCGGAGATGGTAGGTACCGCGGCGGTAACGATGG
ACGTTATCGCGGTGGAGGCGATGGACGATACTCGGGTGGCAACGATGGAC
GCTACGTGCACATGGACAACAAGTACAAGCACGACGATCGTCCTGGTGGG
GATTACTCCGGCGATGCAGGTCGCTATGTGGGGGACAAGAACAGGGGTGG
TGGAGGCGGTGGTGGCGGTGGTGGTGGTGGTGGAGGTGGATCCGGGGCAG
GTGGTGGTGGAGCAGCAGTTGTAGTGCCCAGAACCTCAGCCAGGCCTCAA
CCAAGACCCACCACTGCAGCGCCGCCGGCTATTGCCGATCCAACTGCCAA
TCTTCCCAAGGGACGTGGCACCGGCGAAGGAGGCAACGGATGGGCCATCA
TCCGCCAGGAAGACGATGTGGAGGTGGATGGCTATCACTATCTTTGGGAA
ACTGAGAACGGCATCTTAGGCGAGGAAAGTGGACGCATCGAAAAGCTGAC
CGAGGAGGAGGGACTTCGTTCCAAGGGATTCTACGAGTACACTGGACCCG
ACGGCATCCTCTACCGCGTGGACTATGTAGCAGACGACAATGGCTTTGTG
CCAAGTGCCGCCCACCTGCCCACAGCGCCACCACCACCGCCCTATGTGGA
AAAGTTACTCGCCTTTTTGGAAGCAAATGCCAAGACGAAGAAAGCAAGCT
TTCTAGACCAT
BO29947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ab-RA | 780 | CG30042-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ab-RA | 852 | CG30042-RA | 18..794 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12378527..12379041 | 34..548 | 2560 | 99.8 | Plus |
2R | 25286936 | 2R | 12379089..12379338 | 544..793 | 1250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:47:50 has no hits.
BO29947.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:46 Download gff for
BO29947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ab-RA | 1..777 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:38 Download gff for
BO29947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ab-RA | 18..794 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:33 Download gff for
BO29947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ab-RA | 18..794 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:33 Download gff for
BO29947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12378457..12378474 | 17..34 | 100 | -> | Plus |
2R | 12378528..12379036 | 35..543 | 100 | -> | Plus |
2R | 12379089..12379338 | 544..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:38 Download gff for
BO29947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8265962..8265979 | 17..34 | 100 | -> | Plus |
arm_2R | 8266033..8266541 | 35..543 | 100 | -> | Plus |
arm_2R | 8266594..8266843 | 544..795 | 99 | | Plus |
BO29947.pep Sequence
Translation from 16 to 811
> BO29947.pep
MWLRVAIVLVIALAAAVLAQNDGRYRPPPTRASAGDGRYRGGNDGRYRGG
GDGRYSGGNDGRYVHMDNKYKHDDRPGGDYSGDAGRYVGDKNRGGGGGGG
GGGGGGGGSGAGGGGAAVVVPRTSARPQPRPTTAAPPAIADPTANLPKGR
GTGEGGNGWAIIRQEDDVEVDGYHYLWETENGILGEESGRIEKLTEEEGL
RSKGFYEYTGPDGILYRVDYVADDNGFVPSAAHLPTAPPPPPYVEKLLAF
LEANAKTKKASFLDH
BO29947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ab-PA | 259 | CG30042-PA | 1..259 | 1..259 | 1409 | 100 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 5..226 | 2..249 | 308 | 34.9 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 5..226 | 2..249 | 308 | 34.9 | Plus |
Cpr49Ac-PG | 315 | CG8502-PG | 11..252 | 5..265 | 268 | 30.5 | Plus |
Cpr49Ac-PF | 315 | CG8502-PF | 11..252 | 5..265 | 268 | 30.5 | Plus |