BO29948.complete Sequence
859 bp assembled on 2012-04-24
GenBank Submission: KX798564
> BO29948.complete
GAAGTTATCAGTCGACATGTCTTACCAAACCGGAGCGGTTTCTACACTCG
TCCTCGTCCTGTTGGCGTTATCCTTTTCGGAGGCAAGTTTACGCCGTCGG
GCCTTCACTTCAGAAAAATCCGAAACCGCGAATAAATTTAGCTCCCGAAT
CGTCGGAGGAGAAGAATCCGATGTCCTGGCGGCACCCTATCTAGTCTCGC
TCCAAAACGCCTATGGTAACCACTTTTGTGCCGGCTCCATTATCCACGAT
CAGTGGGTCATCACCGCGGCTAGTTGCCTGGCTGGATTGCGAAAGAACAA
CGTGCAGGTGGTGACCACCACCTATAATCACTGGGGATCGGAGGGCTGGA
TATACTCCGTGGAGGATATCGTCATGCACTGCAACTTCGACAGCCCCATG
TACCATAATGACATTGCCCTGATCAAGACGCATGCACTATTCGATTACGA
TGATGTCACTCAGAATATCACAATCGCTCCGTTGGAGGATTTGACCGATG
GTGAAACGCTAACCATGTACGGATACGGCAGCACGGAGATCGGAGGAGAT
TTCTCATGGCAGCTGCAGCAGTTGGATGTAACCTATGTCGCGCCGGAAAA
GTGCAATGCCACGTACGGCGGTACTCCAGATCTGGATGTGGGTCACCTTT
GTGCCGTGGGAAAGGTGGGAGCCGGAGCATGTCATGGAGATACCGGAGGA
CCCATCGTTGACAGTCGTGGTCGCTTGGTGGGCGTTGGTAACTGGGGCGT
TCCGTGCGGCTATGGATTTCCCGATGTTTTTGCCCGCATTAGCTTTTACT
ACAGCTGGATTATATCAACGATTAACGGATGTGCTATTTCCGCAAGCTTT
CTAGACCAT
BO29948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31267-RA | 828 | CG31267-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31267-RA | 921 | CG31267-RA | 24..848 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17134585..17135210 | 216..841 | 3130 | 100 | Plus |
| 3R | 32079331 | 3R | 17134220..17134419 | 17..216 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:48:02 has no hits.
BO29948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:47 Download gff for
BO29948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31267-RA | 24..848 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:39 Download gff for
BO29948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31267-RA | 24..848 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:57:37 Download gff for
BO29948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31267-RA | 24..848 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:57:37 Download gff for
BO29948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17134220..17134419 | 17..216 | 100 | -> | Plus |
| 3R | 17134586..17135210 | 217..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:39 Download gff for
BO29948.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12959942..12960141 | 17..216 | 100 | -> | Plus |
| arm_3R | 12960308..12960932 | 217..843 | 99 | | Plus |
BO29948.pep Sequence
Translation from 16 to 859
> BO29948.pep
MSYQTGAVSTLVLVLLALSFSEASLRRRAFTSEKSETANKFSSRIVGGEE
SDVLAAPYLVSLQNAYGNHFCAGSIIHDQWVITAASCLAGLRKNNVQVVT
TTYNHWGSEGWIYSVEDIVMHCNFDSPMYHNDIALIKTHALFDYDDVTQN
ITIAPLEDLTDGETLTMYGYGSTEIGGDFSWQLQQLDVTYVAPEKCNATY
GGTPDLDVGHLCAVGKVGAGACHGDTGGPIVDSRGRLVGVGNWGVPCGYG
FPDVFARISFYYSWIISTINGCAISASFLDH
BO29948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31267-PA | 275 | CG31267-PA | 1..275 | 1..275 | 1473 | 100 | Plus |
| CG31266-PB | 282 | CG31266-PB | 11..282 | 11..275 | 640 | 44.1 | Plus |
| CG5246-PA | 272 | CG5246-PA | 37..261 | 40..265 | 496 | 42.5 | Plus |
| CG31265-PA | 266 | CG31265-PA | 34..260 | 42..271 | 494 | 43 | Plus |
| CG31269-PB | 273 | CG31269-PB | 3..261 | 9..271 | 463 | 39.2 | Plus |
