BO29951.complete Sequence
1198 bp assembled on 2012-04-24
GenBank Submission: KX794689
> BO29951.complete
GAAGTTATCAGTCGACATGTCGTACAAAGCGTTTGTCTTCTTTTGTCTCT
ATATTGACCTTGCCAAGGGACTAATTACATCCGAAATTATAGCCTCGCAC
AACTATCCGGTAGAAGTACACACAGTGCTCACACGAGATGGGTATTTACT
CGACGCGTTCCGGATACCGGGCTCTAAATTTTGTCAGCAATCTGGACCAA
AGCCGGCGGTTCTCTTTCAGCACGGAATGTCCGCGTCCTCGGACGTTTTC
CTGCTAAACGGACCTCAGGATTCATTGGCATTCATGTTGGCCGACGCCTG
CTTCGATGTGTGGCTGAGTAACTCAAGGGGCACTCGGTATTCCCGACGCC
ACGTGTCTTTGGATCCCTCTGATGAGGCCTTCTGGCGCTTCAGCTGGCAC
GAGATTGGAACGGAGGACGTGGCCGCTTTCATAGACTACATTCTGGACAC
CACGAAGCAGAGAGCGTTGCACTTCTTGGGTCACTCGCAGGGATGCACCA
CGCTGGTGGTGCTCCTCAGCATGCGACCGGAGTACAACAAGTTGGTCAAG
ACCGCAGTCCTATTAGCTCCGGCTGTCTTTATGCGCCACACAAGCACCCT
TTCGCAGACCGTCTTCAGGAGTTTCATAATGGCCATGCCCGACAAGGAGT
TCATGTACCACAACGGAGTTTTAAACAAACTCTTGAGTAATGTATGCGGG
CTATTCGTTGCCAGGGTGTTCTGCACAACCTTCTTCTTGATTTCCAACGG
AAAAATTTCCAAACACCTAAACACAAGCGTTATTCCTCTGATTGCCGCCA
CGCTTCCTGCGGGAGTTTCTTCTCGCCAGCCCAAGCACTTCATCCAGCTC
ACGGACAGCGGCAAGTTCAGACCATTCGATTTCGGGATCCTGAGGAACTT
GATCAACTACAAGAGCCTAGAACCTCCAGACTATACTTTGAGCAACGTCC
GTCCCCTGACGCCAGTCCACATATTCTACAGCGACGATGATAGTTCGACA
GCAAAGGAGGATATTCAAAACTTTGCCGCCAGAGTGCCGGAGGTGGTGAT
GCACCGGATCTCAACACCGGGCTGGCACCATACGGACTTCGTGCATTCCA
TGACCGTTGCTGACGTAATCAACAAGCCGGTCATTGAAATTTTTAGAAGC
TTTGAGCGACTCAGCAGTCCTACATTTTTAGCAAGCTTTCTAGACCAT
BO29951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-RB | 1167 | CG11598-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| CG18530-RA | 1167 | CG18530-PA | 62..1138 | 81..1157 | 2880 | 84.5 | Plus |
| CG11600-RB | 1221 | CG11600-PB | 427..588 | 377..538 | 285 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-RB | 1248 | CG11598-RB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| CG18530-RA | 1188 | CG18530-RA | 65..1141 | 81..1157 | 2880 | 84.5 | Plus |
| CG11600-RB | 1330 | CG11600-RB | 440..601 | 377..538 | 285 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12635035..12635730 | 80..775 | 3480 | 100 | Plus |
| 3R | 32079331 | 3R | 12635795..12636199 | 776..1180 | 2025 | 100 | Plus |
| 3R | 32079331 | 3R | 12633483..12634177 | 81..775 | 1765 | 83.6 | Plus |
| 3R | 32079331 | 3R | 12634248..12634623 | 782..1157 | 1130 | 86.7 | Plus |
| 3R | 32079331 | 3R | 12634912..12634979 | 12..79 | 325 | 98.5 | Plus |
| 3R | 32079331 | 3R | 12637033..12637194 | 377..538 | 285 | 78.4 | Plus |
| 3R | 32079331 | 3R | 12639039..12639193 | 383..537 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:48:59 has no hits.
BO29951.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:51 Download gff for
BO29951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1164 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:49 Download gff for
BO29951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1164 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:02 Download gff for
BO29951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11598-RB | 1..1164 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:02 Download gff for
BO29951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12634917..12634979 | 17..79 | 100 | -> | Plus |
| 3R | 12635035..12635730 | 80..775 | 100 | -> | Plus |
| 3R | 12635795..12636199 | 776..1182 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:49 Download gff for
BO29951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8460639..8460701 | 17..79 | 100 | -> | Plus |
| arm_3R | 8460757..8461452 | 80..775 | 100 | -> | Plus |
| arm_3R | 8461517..8461921 | 776..1182 | 99 | | Plus |
BO29951.pep Sequence
Translation from 16 to 1198
> BO29951.pep
MSYKAFVFFCLYIDLAKGLITSEIIASHNYPVEVHTVLTRDGYLLDAFRI
PGSKFCQQSGPKPAVLFQHGMSASSDVFLLNGPQDSLAFMLADACFDVWL
SNSRGTRYSRRHVSLDPSDEAFWRFSWHEIGTEDVAAFIDYILDTTKQRA
LHFLGHSQGCTTLVVLLSMRPEYNKLVKTAVLLAPAVFMRHTSTLSQTVF
RSFIMAMPDKEFMYHNGVLNKLLSNVCGLFVARVFCTTFFLISNGKISKH
LNTSVIPLIAATLPAGVSSRQPKHFIQLTDSGKFRPFDFGILRNLINYKS
LEPPDYTLSNVRPLTPVHIFYSDDDSSTAKEDIQNFAARVPEVVMHRIST
PGWHHTDFVHSMTVADVINKPVIEIFRSFERLSSPTFLASFLDH
BO29951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11598-PB | 388 | CG11598-PB | 1..388 | 1..388 | 2031 | 100 | Plus |
| CG18530-PA | 389 | CG18530-PA | 1..381 | 1..381 | 1609 | 77.4 | Plus |
| CG11608-PB | 430 | CG11608-PB | 44..407 | 17..380 | 1048 | 49.5 | Plus |
| CG11600-PB | 406 | CG11600-PB | 46..402 | 24..380 | 979 | 49.6 | Plus |
| CG31089-PA | 421 | CG31089-PA | 39..415 | 12..380 | 734 | 41 | Plus |
