Clone BO29952 Report

Search the DGRC for BO29952

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG13776-RA
Protein status:BO29952.pep: Imported from assembly
Sequenced Size:1111

Clone Sequence Records

BO29952.complete Sequence

1111 bp assembled on 2012-04-24

GenBank Submission: KX796966

> BO29952.complete
GAAGTTATCAGTCGACATGTGGTTGGCTGGGAATCTGTTCAAAGGATCCG
TAGCAATCAGATTCGGTCGCTTGCTGCATCTCAAGCGCAAGGAGGTTTAT
ATGGAATGCTTCCGCATCCTGGGCGTTCACGAATCAGCTGATCAGAATAC
GGTACGCCACGCCTACTTGGATCTGGTGAAACGGGTGCATCCCGATTCGG
GAACGGAGGAGGCCAGTGCCGAACGCTTCCAGCAGGTGGACGAGGCTTTC
CGTGTGCTGCAGGAAAAGTTCGCCAAGGGAAGGCGAAACATTCAGGAGGA
CGAGGAGGGGGCCATGGAGTTTGACATCAAGCATACGGCGCCGCAGCACC
GGCAATATCTGTCCAACGAGGGCATCGGAGTGGGAACTCCATTTCAGCGG
CAAAAGCAGTACCAGCAGGTGCGCGCCATGAAGGCTCAGGAACGCGTCCT
GGAGCACCGCATCGACAAGGCGGCTGCCGGAGAGAAAACACTAATGTCCA
AGGGCGGCAGCCACTTTCGGAAACATGCTATTAAGACCAAGTACGGTATT
GATCGTGTGGTCGAGGATCTCATTCAGGAGGCCATGTCCAAGGGTGACTT
TAACAATCTAAACGGGTCTGGAAAGCCCCTGTCCTCGGCTCAGTCGCAGA
ATCCCTATCTGGACTTTACGACCCACAAGTTGAACAAGATTATGTTAGAC
AACGGCTTCACGCCGGAATGGATAAGCCTGGGCAAGGATATTCGCGATGC
GATTGCTCAGCTGAAGACGAAACTGCGCCAGGAGCGCAAATACTACGGCG
AATGGCCATTGCAGCGCCCGGACGATCTGGCAGCCTGGAAAATATTCACG
CTGAATCACCAGGACGATGTGAAGCAATTGAACAAACTCATTGACAAGTA
CAATCTAATAGTGCCCATTCTGGAAAATCAGTTCTTTCGCCTGCATCTCG
ACAGAATGGCCGAACCTATATTTAAGGATCCGGAATTGCAACGTAACGTA
ATCAGACCCGAAATGAAATCTAAGCCCAGCAGCAATCTAGAGAATCAGGG
CAGCGCTAGTACAAGTTTATTTTCCCTAATTAGCAAACTATTGGCAAGCT
TTCTAGACCAT

BO29952.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG43322-RA 1080 CG43322-PA 1..1077 17..1093 5385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG43322-RA 1272 CG43322-RA 101..1177 17..1093 5385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7013652..7014642 103..1093 4955 100 Plus
2L 23513712 2L 7013496..7013583 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:49:07 has no hits.

BO29952.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:52 Download gff for BO29952.complete
Subject Subject Range Query Range Percent Splice Strand
CG13776-RA 101..1177 17..1095 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:52 Download gff for BO29952.complete
Subject Subject Range Query Range Percent Splice Strand
CG43322-RA 101..1177 17..1095 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:05 Download gff for BO29952.complete
Subject Subject Range Query Range Percent Splice Strand
CG43322-RA 101..1177 17..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:05 Download gff for BO29952.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7013496..7013582 17..103 100 -> Plus
2L 7013653..7014642 104..1095 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:52 Download gff for BO29952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7013496..7013582 17..103 100 -> Plus
arm_2L 7013653..7014642 104..1095 99   Plus

BO29952.pep Sequence

Translation from 16 to 1111

> BO29952.pep
MWLAGNLFKGSVAIRFGRLLHLKRKEVYMECFRILGVHESADQNTVRHAY
LDLVKRVHPDSGTEEASAERFQQVDEAFRVLQEKFAKGRRNIQEDEEGAM
EFDIKHTAPQHRQYLSNEGIGVGTPFQRQKQYQQVRAMKAQERVLEHRID
KAAAGEKTLMSKGGSHFRKHAIKTKYGIDRVVEDLIQEAMSKGDFNNLNG
SGKPLSSAQSQNPYLDFTTHKLNKIMLDNGFTPEWISLGKDIRDAIAQLK
TKLRQERKYYGEWPLQRPDDLAAWKIFTLNHQDDVKQLNKLIDKYNLIVP
ILENQFFRLHLDRMAEPIFKDPELQRNVIRPEMKSKPSSNLENQGSASTS
LFSLISKLLASFLDH

BO29952.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG43322-PA 359 CG43322-PA 1..359 1..359 1862 100 Plus