BO29954.complete Sequence
1024 bp assembled on 2012-04-24
GenBank Submission: KX799387
> BO29954.complete
GAAGTTATCAGTCGACATGCTGCGACCACTGTGCATTATTCAGATCCTTT
TGCTCGCTTTCCTGGCGAACGAGTCGGAATCCTCGAACACTCATCTCCAT
CGCTATATGCTGGACACCTATAAGCCGCAGCACAATCGAAAAACCCAAAT
GAACTACAAACGACGCCGTACTGTAAGGAGCGATCACGAAATGGCTATCG
ATCCCAATAATCCAAATAATCCCAATAATCCAAATAATTCCGATAGTCCC
GATAATCCCAATAATCTCAATAATCCAAATAATCCGAATAATGACACAGT
ACAGTATGGACATTCCAAGGAGCCTGTAGTTACCTTGACCAATTCGGACA
AGAAGGTGCCGCTGCACGAGCTGATGGTGAGACTCTATCAGCAAAACAAA
TATATCTGCATGGGCACGGTGATATCCGAGATGCTAGTGATTACCACTAG
CACTTGTTTTAATTTGGCCAGCAGTGAAGTGGTCACGATGAAGATGTACG
ATGACGAAGTCCTCGAAGGGAAAAGAGTCGCTCTCAACCAGACCTACCTT
AAAGGAGCGGATCCCATGCTGGTTGCTATTCAACTAACCAAGTCCCCAAA
GAATTCCAAAGTGACTGGTGACACCGTGAAGCTGTGCGATTCGGAGCTAG
AAATATACGAGCCCATCGAGCTGCCACTGTGGATCAGGAGTCGCCACAGT
ATTCACTCGCAGACAACGTACATCATACCGATGCAGGCGTGCCGACTCCG
CATGAGGGATCCCGAAGCGATGGTCGCCACCGACACTATGATCTGCGTGA
AGAACATGAAGTATACGGCCCAGTGCCAGTTGGCCATGGGTAATCCCCTC
GTTCACGACGAACGCATCTGCGGCATCAATGTGGCTGGTCACAACTGTCC
CGCCTACACGGGCGTGGATCTATACATCAGGGTATACGATGCTCTCGCCT
TCTCGATAATGGGCATGGAAATCATTAAAAACTCCCGCATAGAAGATACC
ATTTTGGCAAGCTTTCTAGACCAT
BO29954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9997-RB | 993 | CG9997-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
CG9997-RA | 993 | CG9997-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9997-RB | 1325 | CG9997-RB | 1..990 | 17..1006 | 4950 | 100 | Plus |
CG9997-RA | 1030 | CG9997-RA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28755990..28756979 | 1006..17 | 4950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:49:15 has no hits.
BO29954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:52 Download gff for
BO29954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9997-RA | 1..990 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:54 Download gff for
BO29954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9997-RA | 1..990 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:08 Download gff for
BO29954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9997-RA | 1..990 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:08 Download gff for
BO29954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28755988..28756979 | 17..1008 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:54 Download gff for
BO29954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24581710..24582701 | 17..1008 | 99 | | Minus |
BO29954.pep Sequence
Translation from 16 to 1024
> BO29954.pep
MLRPLCIIQILLLAFLANESESSNTHLHRYMLDTYKPQHNRKTQMNYKRR
RTVRSDHEMAIDPNNPNNPNNPNNSDSPDNPNNLNNPNNPNNDTVQYGHS
KEPVVTLTNSDKKVPLHELMVRLYQQNKYICMGTVISEMLVITTSTCFNL
ASSEVVTMKMYDDEVLEGKRVALNQTYLKGADPMLVAIQLTKSPKNSKVT
GDTVKLCDSELEIYEPIELPLWIRSRHSIHSQTTYIIPMQACRLRMRDPE
AMVATDTMICVKNMKYTAQCQLAMGNPLVHDERICGINVAGHNCPAYTGV
DLYIRVYDALAFSIMGMEIIKNSRIEDTILASFLDH
BO29954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9997-PB | 330 | CG9997-PB | 1..330 | 1..330 | 1742 | 100 | Plus |
CG9997-PA | 330 | CG9997-PA | 1..330 | 1..330 | 1742 | 100 | Plus |
intr-PA | 298 | CG12558-PA | 102..285 | 120..309 | 169 | 25.1 | Plus |
Sems-PA | 275 | CG10586-PA | 59..270 | 120..320 | 150 | 24.2 | Plus |