Clone BO29955 Report

Search the DGRC for BO29955

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG9997-RA
Protein status:BO29955.pep: Imported from assembly
Sequenced Size:1024

Clone Sequence Records

BO29955.complete Sequence

1024 bp assembled on 2012-04-24

GenBank Submission: KX797721

> BO29955.complete
GAAGTTATCAGTCGACATGCTGCGACCACTGTGCATTATTCAGATCCTTT
TGCTCGCTTTCCTGGCGAACGAGTCGGAATCCTCGAACACTCATCTCCAT
CGCTATATGCTGGACACCTATAAGCCGCAGCACAATCGAAAAACCCAAAT
GAACTACAAACGACGCCGTACTGTAAGGAGCGATCACGAAATGGCTATCG
ATCCCAATAATCCAAATAATCCCAATAATCCAAATAATTCCGATAGTCCC
GATAATCCCAATAATCTCAATAATCCAAATAATCCGAATAATGACACAGT
ACAGTATGGACATTCCAAGGAGCCTGTAGTTACCTTGACCAATTCGGACA
AGAAGGTGCCGCTGCACGAGCTGATGGTGAGACTCTATCAGCAAAACAAA
TATATCTGCATGGGCACGGTGATATCCGAGATGCTAGTGATTACCACTAG
CACTTGTTTTAATTTGGCCAGCAGTGAAGTGGTCACGATGAAGATGTACG
ATGACGAAGTCCTCGAAGGGAAAAGAGTCGCTCTCAACCAGACCTACCTT
AAAGGAGCGGATCCCATGCTGGTTGCTATTCAACTAACCAAGTCCCCAAA
GAATTCCAAAGTGACTGGTGACACCGTGAAGCTGTGCGATTCGGAGCTAG
AAATATACGAGCCCATCGAGCTGCCACTGTGGATCAGGAGTCGCCACAGT
ATTCACTCGCAGACAACGTACATCATACCGATGCAGGCGTGCCGACTCCG
CATGAGGGATCCCGAAGCGATGGTCGCCACCGACACTATGATCTGCGTGA
AGAACATGAAGTATACGGCCCAGTGCCAGTTGGCCATGGGTAATCCCCTC
GTTCACGACGAACGCATCTGCGGCATCAATGTGGCTGGTCACAACTGTCC
CGCCTACACGGGCGTGGATCTATACATCAGGGTATACGATGCTCTCGCCT
TCTCGATAATGGGCATGGAAATCATTAAAAACTCCCGCATAGAAGATACC
ATTTTGGCAAGCTTTCTAGACCAT

BO29955.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9997-RB 993 CG9997-PB 1..990 17..1006 4950 100 Plus
CG9997-RA 993 CG9997-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9997-RB 1325 CG9997-RB 1..990 17..1006 4950 100 Plus
CG9997-RA 1030 CG9997-RA 1..990 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28755990..28756979 1006..17 4950 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:49:23 has no hits.

BO29955.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:53 Download gff for BO29955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..990 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:57 Download gff for BO29955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..990 17..1008 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:12 Download gff for BO29955.complete
Subject Subject Range Query Range Percent Splice Strand
CG9997-RA 1..990 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:12 Download gff for BO29955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28755988..28756979 17..1008 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:57 Download gff for BO29955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24581710..24582701 17..1008 99   Minus

BO29955.pep Sequence

Translation from 16 to 1024

> BO29955.pep
MLRPLCIIQILLLAFLANESESSNTHLHRYMLDTYKPQHNRKTQMNYKRR
RTVRSDHEMAIDPNNPNNPNNPNNSDSPDNPNNLNNPNNPNNDTVQYGHS
KEPVVTLTNSDKKVPLHELMVRLYQQNKYICMGTVISEMLVITTSTCFNL
ASSEVVTMKMYDDEVLEGKRVALNQTYLKGADPMLVAIQLTKSPKNSKVT
GDTVKLCDSELEIYEPIELPLWIRSRHSIHSQTTYIIPMQACRLRMRDPE
AMVATDTMICVKNMKYTAQCQLAMGNPLVHDERICGINVAGHNCPAYTGV
DLYIRVYDALAFSIMGMEIIKNSRIEDTILASFLDH

BO29955.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9997-PB 330 CG9997-PB 1..330 1..330 1742 100 Plus
CG9997-PA 330 CG9997-PA 1..330 1..330 1742 100 Plus
intr-PA 298 CG12558-PA 102..285 120..309 169 25.1 Plus
Sems-PA 275 CG10586-PA 59..270 120..320 150 24.2 Plus