BO29958.complete Sequence
2032 bp assembled on 2012-04-24
GenBank Submission: KX797843
> BO29958.complete
GAAGTTATCAGTCGACATGAAGTTGATCCGGGGCACAACTCTTTTGGGCA
TCGGCATATTATTCGTCGGGTGCGGGGCGTTCAGCCTGCCCTCCGTTTAC
GATGTCCTGTCTAAGGATCAGCAGGCCACATCCTTTGTATCAGCCAGCAT
AGCGGAAGAGATAAGCCGTGAGTACCTGAAGTACCACCGAACTGGCATCG
AGACGGAGAGGCTTCGCCAGCTGGGAAAGGACATCCGGAGTAGTCACAGC
AAGAAGGCCATTTTCACGGAATCCATGGCCGATCTCACCTCAACGGACCA
GTTCTTCGTCTGCACCCTGTGCAGATCTACCATCAACGTGTTTGCTCGAA
CTTTCACCGAGGGCGAGCTGAGTGGTCCGGAAAGGGATGATGAGGCGAAG
AAATTGATGCTGGGCATGTGTGACTACTTTGCTATCAGCACCCAGGAGGT
GTGCTCCGGATTATTCGATCTCAACTGGCCGATTCTGGACTTTATTCTGA
ACGAAACTGTGGCAAAGTCGAACACCTTTTGCAGCATGCTGCCCATCCCA
ATTTGTCAGGTGAAACAGGATGAGTACAATCTCACCTTGTCCATCCAGGG
AGACTTGCCCCAGGAATCGAACTCCAACTTGCCCGCCAAGACCTCCGAGG
ATATTCTTGTCCTGCACCTGACCGACATCCACTACGATCCTGAATACGCC
GAGGGCAGCAATGCAGCTTGCGATGAGCCCATGTGCTGCAGAAATTCCCT
GCCCGAAGGATCTGACTCGTCGGCAGCTGCTGGCTTTTGGTCTGATTACC
GTGATTGTGACTGCCCCAAACGCCTCATCCTTAGTGCTTTCGAGCACATC
AAGGAAAACCACAAGATCGAGTGGATATACCATACTGGAGATGTGCCGCC
CCACAACGTGTGGTCCACCACCAGACAGGGCAACCTGGATATGTTGTCCG
AAATCGACGAACTGCTGGCCAAGTATTTCCCGGACACGCCCATCTACCCA
TGTCTTGGAAACCACGAGCCACATCCAGCAAATGTTTTCGGAAACGACGA
GATTCCCAGCTCCCTTAGAGTTGACTGGTTGTATGAGCACGTGTGGAGTT
TGTGGTCCAAGTGGTTGCCCGCCGAGGCGGAGGAGACTGTTCTTCGAGGA
GGATATTACACTGCATCCCCGAGCAAAGGACACAGGATTGTGGCCCTGAA
CAGCATGGACTGCTACCTGTACAACTGGTGGTTGTTCTATAATGCCACGT
TGATTCAGGAGCAGCTGCAGTGGTTCCACGACACTCTATTGTCTGCGGAG
GAGGCGGGAGAATCGGTCCACATCCTGACCCATATTCCCGCTGGAGATGG
AGACTGCTGGTGTAACTGGTCTCAAGAATACAATAGGGTTCTCACCCGAT
TCAATGGCATCATCACTGGAGTCTTCAGTGGTCACACCCACAAGGACGAG
ATGAACTTGCATTACTCCGAGGACGGCTATGCCACGGTGGTCAACTGGAA
TGGCGGTAGTCTGACCTCCTACTCGAACAAGAACCCCAACTACCGGCTGT
ACGAACTCCACCCGGAGAACTGGCAGGTCCTGGACCACCACACGTACACA
TTCAACCTGACGGAGGCCAACCTGACGCCCGACGAGCAGCCCAAGTGGGA
GCTGGAGTACCAGTTCACCAAGGAGTACACCGAGGACACCAGTCCCGCGG
GAATCGATCGCTTGCTGTTGGAAATGGCTGAGAAGCCCGACTTGCTAAGG
AAGTTCTGGAGGAACAAGTTCACCAACTCCGATCCCAAGCTGGCAGAGGG
CTGTGATAACGCATGTTTGAGCAAGACGATTTGCAGGATAGCCACCAGTA
ATTACCAGGAGCGCACTCGCTGCAAGGAACTCCAGGCCATCCTGGCTGAG
AGCTTGGAAAACGAGCCGGATACGGATGATAATAATGGCGGAGGTGCTGC
TGGACTATCTGCCCTCAGTTTGGCCTCCCTGCTGGCGCTTTTGGCTGCAT
CTAAGCTCCTTGGAGCAAGCTTTCTAGACCAT
BO29958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15534-RA | 2001 | CG15534-PA | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15534-RA | 2164 | CG15534-RA | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30432408..30433302 | 141..1035 | 4475 | 100 | Plus |
| 3R | 32079331 | 3R | 30433936..30434803 | 1036..1903 | 4340 | 100 | Plus |
| 3R | 32079331 | 3R | 30432059..30432190 | 12..143 | 645 | 99.2 | Plus |
| 3R | 32079331 | 3R | 30434863..30434973 | 1904..2014 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:42:03 has no hits.
BO29958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:23 Download gff for
BO29958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1998 | 17..2016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:30 Download gff for
BO29958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1998 | 17..2016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:55:23 Download gff for
BO29958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15534-RA | 1..1998 | 17..2016 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:55:23 Download gff for
BO29958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30432064..30432190 | 17..143 | 100 | -> | Plus |
| 3R | 30432411..30433302 | 144..1035 | 100 | -> | Plus |
| 3R | 30433936..30434803 | 1036..1903 | 100 | -> | Plus |
| 3R | 30434863..30434973 | 1904..2016 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:30 Download gff for
BO29958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26257786..26257912 | 17..143 | 100 | -> | Plus |
| arm_3R | 26258133..26259024 | 144..1035 | 100 | -> | Plus |
| arm_3R | 26259658..26260525 | 1036..1903 | 100 | -> | Plus |
| arm_3R | 26260585..26260695 | 1904..2016 | 98 | | Plus |
BO29958.pep Sequence
Translation from 16 to 2032
> BO29958.pep
MKLIRGTTLLGIGILFVGCGAFSLPSVYDVLSKDQQATSFVSASIAEEIS
REYLKYHRTGIETERLRQLGKDIRSSHSKKAIFTESMADLTSTDQFFVCT
LCRSTINVFARTFTEGELSGPERDDEAKKLMLGMCDYFAISTQEVCSGLF
DLNWPILDFILNETVAKSNTFCSMLPIPICQVKQDEYNLTLSIQGDLPQE
SNSNLPAKTSEDILVLHLTDIHYDPEYAEGSNAACDEPMCCRNSLPEGSD
SSAAAGFWSDYRDCDCPKRLILSAFEHIKENHKIEWIYHTGDVPPHNVWS
TTRQGNLDMLSEIDELLAKYFPDTPIYPCLGNHEPHPANVFGNDEIPSSL
RVDWLYEHVWSLWSKWLPAEAEETVLRGGYYTASPSKGHRIVALNSMDCY
LYNWWLFYNATLIQEQLQWFHDTLLSAEEAGESVHILTHIPAGDGDCWCN
WSQEYNRVLTRFNGIITGVFSGHTHKDEMNLHYSEDGYATVVNWNGGSLT
SYSNKNPNYRLYELHPENWQVLDHHTYTFNLTEANLTPDEQPKWELEYQF
TKEYTEDTSPAGIDRLLLEMAEKPDLLRKFWRNKFTNSDPKLAEGCDNAC
LSKTICRIATSNYQERTRCKELQAILAESLENEPDTDDNNGGGAAGLSAL
SLASLLALLAASKLLGASFLDH
BO29958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15534-PA | 666 | CG15534-PA | 1..666 | 1..666 | 3599 | 100 | Plus |
| CG15533-PA | 692 | CG15533-PA | 16..690 | 16..664 | 1650 | 45.8 | Plus |
| CG3376-PB | 708 | CG3376-PB | 158..691 | 99..628 | 800 | 32.8 | Plus |
| CG3376-PD | 726 | CG3376-PD | 158..691 | 99..628 | 800 | 32.8 | Plus |
| CG3376-PA | 735 | CG3376-PA | 158..691 | 99..628 | 800 | 32.8 | Plus |
