BO29960.complete Sequence
868 bp assembled on 2011-09-20
GenBank Submission: KX796632
> BO29960.complete
GAAGTTATCAGTCGACATGGAACCTATACTGATAGAAAAATCTCAGTGGC
CAGAGCTCAGAGATTTGTACGCGAATGATAGAACTAATCTCACGGGATTC
GACTTAATCGAGTACTTTTTAAATTACATACCCTTATCCACAACCGAATC
CATAAAGATATATACAACTGATACGGATTGGAGAACACATGGCAGTTATA
TACTAATTCATTATTTGGAGAACAAGGCCTATATTTATATGAATACCATT
AAGGGAACCCCAGAAGATCTTGGCAAATTGTTGAACTCTCTAAAACTTAA
AGTGTTTCATTTAATCTGTGGCTATGAAGAACGATTCAAACCATTAGTTG
AGGCATATTGGCTGAATTTGGGTCAAGATTTGATTAATCTTGAACACCAG
GGCGCTATTGTTTACCACCTGCCAAGCACCGAAATTCCCAGTTGGAAACC
AAGTTTGAGTACCTCTTGCAAAGTGGCTTATATCACATCAAATCATGCCG
AATTGGTCGACAAACATTGGGCTTATCGTTCAGCTGATTCTATAACTATG
ATAAGGGGTTTTATGGAGAACAATCTCGCTGTTGGTGTTTTTGATAACCA
AGGAGAACCCCTAGCGTGGTGTCTAAGATCTCCTCATGGTAGTTTGAGTA
ACCTACACGTTTTATCCTCACATCGTCGAATGGGATTGGGTTCTTTGGCA
GTGCGCTTTATGGCTAATGAAATCAAGTTAAAGGGCTCAGAAGTTCTGGC
CACAGTTGTTCCCGAAAACGAGGGTTCGCAAAAAATGTTCGAGAAACTAG
GATTCAACAATATCAACAAACTCTACTGGGCAGTGATACCGTGCACTTTA
GCAAGCTTTCTAGACCAT
BO29960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-RA | 837 | CG34010-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-RA | 876 | CG34010-RA | 18..851 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8010135..8010379 | 453..209 | 1225 | 100 | Minus |
| 2L | 23513712 | 2L | 8009628..8009852 | 850..626 | 1125 | 100 | Minus |
| 2L | 23513712 | 2L | 8010444..8010635 | 208..17 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 8009905..8010080 | 627..452 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:47:00 has no hits.
BO29960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:30 Download gff for
BO29960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 1..834 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:18 Download gff for
BO29960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 18..851 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:44 Download gff for
BO29960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34010-RA | 18..851 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:44 Download gff for
BO29960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8009626..8009850 | 628..852 | 99 | <- | Minus |
| 2L | 8009905..8010078 | 454..627 | 100 | <- | Minus |
| 2L | 8010135..8010379 | 209..453 | 100 | <- | Minus |
| 2L | 8010444..8010635 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:18 Download gff for
BO29960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8009905..8010078 | 454..627 | 100 | <- | Minus |
| arm_2L | 8009626..8009850 | 628..852 | 99 | <- | Minus |
| arm_2L | 8010135..8010379 | 209..453 | 100 | <- | Minus |
| arm_2L | 8010444..8010635 | 17..208 | 100 | | Minus |
BO29960.pep Sequence
Translation from 16 to 868
> BO29960.pep
MEPILIEKSQWPELRDLYANDRTNLTGFDLIEYFLNYIPLSTTESIKIYT
TDTDWRTHGSYILIHYLENKAYIYMNTIKGTPEDLGKLLNSLKLKVFHLI
CGYEERFKPLVEAYWLNLGQDLINLEHQGAIVYHLPSTEIPSWKPSLSTS
CKVAYITSNHAELVDKHWAYRSADSITMIRGFMENNLAVGVFDNQGEPLA
WCLRSPHGSLSNLHVLSSHRRMGLGSLAVRFMANEIKLKGSEVLATVVPE
NEGSQKMFEKLGFNNINKLYWAVIPCTLASFLDH
BO29960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34010-PA | 278 | CG34010-PA | 1..278 | 1..278 | 1479 | 100 | Plus |
| CG12560-PB | 278 | CG12560-PB | 10..277 | 6..272 | 396 | 32.5 | Plus |
| CG12560-PC | 272 | CG12560-PC | 10..271 | 6..272 | 391 | 32.6 | Plus |
| CG17681-PA | 293 | CG17681-PA | 18..279 | 13..274 | 225 | 26 | Plus |
| CG5783-PA | 287 | CG5783-PA | 49..271 | 45..271 | 199 | 26.9 | Plus |
