Clone BO29969 Report

Search the DGRC for BO29969

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptRab9Fa-RA
Protein status:BO29969.pep: Imported from assembly
Sequenced Size:625

Clone Sequence Records

BO29969.complete Sequence

625 bp assembled on 2011-09-15

GenBank Submission: KX800021

> BO29969.complete
GAAGTTATCAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCA
TCCTGGGTGACAGCGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCG
GATAACCAATTCACCACAAGACACCGGAGCACTGTGGGCTTGGATAGAAG
GGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAG
TCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAA
TGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAA
AAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTC
CGGATAAGGTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAAC
CATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTC
AATCTGCTTTGAAGAGGTTTCCGCCAAAAGTGGAAGGAATGTATATGACA
TATTTAGCTCGTTGGCAATGGACATATATACATATCGTCGTGTACATTGC
AACCCGTTCAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGCAGAGTC
ACTGGATGCAAGCTTTCTAGACCAT

BO29969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fa-RA 594 CG32671-PA 1..591 17..607 2955 100 Plus
Rab9D-RA 594 CG32678-PA 1..591 17..607 2880 99.2 Plus
Rab9E-RA 594 CG32673-PA 1..591 17..607 2865 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fa-RA 871 CG32671-RA 68..658 17..607 2955 100 Plus
Rab9D-RA 897 CG32678-RA 94..684 17..607 2880 99.2 Plus
Rab9E-RA 889 CG32673-RA 86..676 17..607 2865 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10950373..10950963 607..17 2955 100 Minus
X 23542271 X 10589182..10589772 17..607 2880 99.2 Plus
X 23542271 X 10661168..10661758 607..17 2865 99 Minus
X 23542271 X 10622568..10623158 607..17 2820 98.5 Minus
X 23542271 X 10417496..10418080 17..607 1620 86 Plus
X 23542271 X 10951938..10952419 504..17 1070 81.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:37:50 has no hits.

BO29969.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-15 17:23:08 Download gff for BO29969.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 68..658 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:20 Download gff for BO29969.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 68..658 17..609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:15 Download gff for BO29969.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Fa-RA 68..658 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:15 Download gff for BO29969.complete
Subject Subject Range Query Range Percent Splice Strand
X 10950371..10950963 17..609 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:20 Download gff for BO29969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10844404..10844996 17..609 99   Minus

BO29969.pep Sequence

Translation from 16 to 625

> BO29969.pep
MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTTRHRSTVGLDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHCNPFSLTSWQEEEDAAESLDASF
LDH

BO29969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Fa-PA 197 CG32671-PA 1..197 1..197 1047 100 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..197 1028 98.5 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..197 1020 97.5 Plus
Rab9Db-PA 197 CG9807-PA 1..197 1..197 1017 97.5 Plus
RabX2-PA 195 CG2885-PA 1..195 1..197 691 72.2 Plus