BO29971.complete Sequence
1114 bp assembled on 2011-09-15
GenBank Submission: KX795398
> BO29971.complete
GAAGTTATCAGTCGACATGGCTTCGTTCCGGTTTCAATTGTTGCAGCTCC
TAGTGGTTCTCAGCCAAGGTTGGGCCAACCTCAACGTGCAGAACAACTAT
AGAAACATGATGGTCCGACTGGCCACTAACAAGGCAGCGCTCGCCGGTAT
TCAAGTCCTCCGCGAGGGACGCGTGGAGGTGAGCTTTGACTTTGGCGCCT
CATGGGGTACGATCTGCAGCACTTCGTGGAGCATGCGGGAGGCAAATGTG
GTGTGCCGACAGCTAGGATTGGGCTACGCTTCCAAGGCAAGCCAGGGAAC
GGAGCACGGGGATAGCCGGAAGTATCCCTGGGGCATGGTGGGCACTCTGT
GCAGGGGAACCGAGCGTCGCCTAGCCGACTGCATCCGGGAGTCCCACTAC
CCGAACCTCTGCAATGCCAGAAACCATAATGTCAGCATTGCGGCCTGTGT
TAGCCATTCGGCTGACCTGGAGATCGGACTGGTGGACATCGAGAGAACCG
CCCGCCTGGAGGCCGTGCCCATGTCGCGGCTCACATGCGCCATGGAAGAG
CACTGTGTTTCCGCCGACGCTTACGAGATCCGAAGGACGAATCCGCACGC
TGCGAGGATACTGCTTCGCTTTTCCGTTAAGGCTTCCAATGTGGGCACCG
CCGATGTAAGCCCATACGCTAACTACAAGGAATGGGTATGGCACCAGTGC
CACAGACACTACCACAGCATGAATGTTTTTGCCACCTTTGATGTTTACGA
CCTCAACTACCGGAAGGTGGCCCAGGGGCACAAGGCCTCCTTTTGCCTGA
TGGACAGTGAATGCCGGCCAGGAGTACGGCAAAAGTACACCTGTGGCAAC
ACCACCCAAGGCATTTCCGTGGGCTGCGCAGACACCTACACCGATGTGTT
GGACTGCCAGTGGGTGGATGTTACCCGAGTTCCCATCAACCGACGCTACA
TCCTGCGAGTGGCCCTCAATCCCGAGTACAAGCTGGGAGAGATATCCTTC
GAGAACAACGGAGCTGAGTGCCTTCTTGACTACACTGGCGTACGGCAGAC
GACAAGGATTTTCAACTGTCGGCGAAAGCCGCTTTGGTTTAAGATTGCAA
GCTTTCTAGACCAT
BO29971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox-RA | 1083 | CG11335-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox-RA | 1435 | CG11335-RA | 149..1228 | 17..1096 | 5400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31458877..31459721 | 861..17 | 4225 | 100 | Minus |
| 3R | 32079331 | 3R | 31458587..31458824 | 1096..859 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:38 has no hits.
BO29971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-15 17:23:10 Download gff for
BO29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 149..1228 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:38 Download gff for
BO29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 149..1228 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:30 Download gff for
BO29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lox-RA | 149..1228 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:30 Download gff for
BO29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31458584..31458822 | 861..1098 | 99 | <- | Minus |
| 3R | 31458878..31459721 | 17..860 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:38 Download gff for
BO29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27284306..27284544 | 861..1098 | 99 | <- | Minus |
| arm_3R | 27284600..27285443 | 17..860 | 100 | | Minus |
BO29971.pep Sequence
Translation from 16 to 1114
> BO29971.pep
MASFRFQLLQLLVVLSQGWANLNVQNNYRNMMVRLATNKAALAGIQVLRE
GRVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTEHGDS
RKYPWGMVGTLCRGTERRLADCIRESHYPNLCNARNHNVSIAACVSHSAD
LEIGLVDIERTARLEAVPMSRLTCAMEEHCVSADAYEIRRTNPHAARILL
RFSVKASNVGTADVSPYANYKEWVWHQCHRHYHSMNVFATFDVYDLNYRK
VAQGHKASFCLMDSECRPGVRQKYTCGNTTQGISVGCADTYTDVLDCQWV
DVTRVPINRRYILRVALNPEYKLGEISFENNGAECLLDYTGVRQTTRIFN
CRRKPLWFKIASFLDH
BO29971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lox-PA | 360 | CG11335-PA | 1..360 | 1..360 | 1935 | 100 | Plus |
| lox2-PA | 511 | CG4402-PA | 203..507 | 50..352 | 745 | 48.2 | Plus |
