BO29975.complete Sequence
2113 bp assembled on 2011-10-14
GenBank Submission: KX794044
> BO29975.complete
GAAGTTATCAGTCGACATGAGCAGTTCGATATTTCGGGCCTTTTGGCTAC
TTTGTTCACTGCTGATCTGTGTCACGAATGCCGCTGATTATCGACTGGAA
GGTAGCGTCGTACCATCGCACTACAACCTGACCATCGGTGTTTTGCGGAA
CTCAGTCGAGCCCACTATTTTCGATGGCGAAGTGAGCATTACCTTGCGGG
TGGTCGGAACTTTGGAGGTGCAACAAATCATTCTACACGCTGATACGCTC
GACATTACGGAATGTTGGCTTTTGGATGCGGCAGGTGCGCAGGTGGAGGC
CATCGATATCAGCAGGTTGATTTATGAGGCCGCCACCCAACAGGTGAGAG
TTCCGCTGACGGAGGCCGCGCAGCCAGGCAAAAATTATACGCTCGGGTTC
AAGTACACCGGGCACATACGAACGGATATGGCCGGCTTCTTCTCCGCCAG
CTATGTGGAGAGGGATACCAATGTGACCAGGTGGTTGGCTCTCACCCAGA
TGCAGCGCATCAACGCCCGTTTGGTCCTGCCCTGCTTCGATGAGCCCGCC
CTGAAGGCACAGTTCCAACTGCAGATTGTTCGGCCCAACGGGTATCAGTC
GATTGCCAACACCAAGCTAAAAGAAACTAAAGCTTTAAGCCAAGATCGTT
TTGTCGATCACTTCAAGGAGACCCCTGTAATGTCCACATATCTGCTGGCC
TTCATGGTGGCCAATTATTCTGCACGTGGAAATGAGAGTGAGTTCGCAGT
GCTCACTCGTCCGGAGTTTTATGATAACACAGAGTTCAGCTACCATGTGG
GTCAGCAGGTGGTTTCAGCATACGGGGAGTTGTTCCAGAGTCCATATGCT
GAACTGGGCAACGATGTGCTGCAGTATGCCAGTTCGCCCAGGTTCCCGCA
CAACGGCATGGAAAACTGGGGCCTCATAATCTACAGCGACGATGTCCTTA
TACAGGAACCTGGATACTCGGATGATTGGTCGGATAAGGAGTTCGCCATA
CGCATCATCGCCCATGAGACCTCACACATGTGGTTCGGGGATAGCGTGAC
CTTCTCCTGGTGGAGCTACTTTTGGCTCAATGAGGCCTTTGCCCGCTACT
ACGAGTACTTCATGGCTCATCAGCTCTATCCAGATTATCACTTGGACGAG
CAGTTTGTGGTGCGCCAAATGCAGCTGATATTTGGAACGGATGCCCAGAA
CGGCACTCAACCCATGACAAGTCCGGAGTCGGAGATTCAAACACCCTCCC
AGATTGCCTACAAGTTCAGCGGGATCGCCTATGCCAAGGGAGCTTGCATT
GTAAGGATGTGGCGAAATCTCATGGGAGCCGAAAACTTTGACACAGCCAT
CAGGAGTTACCTGCAGCAATACCACTTGACCAATACAGTACCTTATAACT
TATTTTACCATCTCTTCGAGCATTGGCCAAAGAATCAGGATGTGGATCTG
GTTGACTTTCTTACCGATTACACCGAGCAGGTTGGTTATCCCATGATAAT
TGTAAAGGCTTTACAGGGTAACAAGGTCGTTACTGTGGAGCAGTCGCGAT
TCCTCCTTAACAAAGACGATGGCAGTAATGCTACACTGAAATACACAGTA
CCAATAACTTTCACCACTAATCTGGAACGCGATTTCTACAACCTTACGCC
ATATAAATACCTACACAAAACAGTTAACGTTCTGTGGCTGGATTTTACCA
GTCCAATTGATTGGATTTTATTTAACCTGAGGCAGTCGAACTACCAACGA
GTGTTCTATGACGACACTTTAAGGGAAGGTCTTCTGTTAGCCATCTCGGC
AACGAATCACAGTGGAATACCGGTTGAGAACCGTGCTCAAATTATTGATG
ATCTCTTCAATTTCGCGCAAGCTCAATATGTGGATTATGCTGATGTATTC
AGGTTCCTGGAATACCTGGCGAAGGAGGTGGAGTACGTGCCCTGGTATGC
CGTCTATGAGAACTTGAATACGGTGGCAAAGCGATTGACACCTGAACAGC
TGCCCGACTTCCGGATATATCTTTCCAGCATCACAGCAGCTGTTTTTGAA
AAACTAGGAGTTGGCTGGAACGCCCAGGATACTCCTGTAGTTAATGCAAG
CTTTCTAGACCAT
BO29975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42335-RE | 2776 | CG42335-PE | 1..2070 | 17..2086 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42335-RE | 2786 | CG42335-RE | 5..2080 | 11..2086 | 10365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21760463..21761186 | 1372..2095 | 3620 | 100 | Plus |
| 3R | 32079331 | 3R | 21758768..21759396 | 11..639 | 3130 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21759458..21759760 | 634..936 | 1500 | 99.7 | Plus |
| 3R | 32079331 | 3R | 21760088..21760339 | 1120..1371 | 1260 | 100 | Plus |
| 3R | 32079331 | 3R | 21759847..21760035 | 935..1123 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:50:11 has no hits.
BO29975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:26 Download gff for
BO29975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42335-RD | 1..2079 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:16 Download gff for
BO29975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42335-RD | 11..2089 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:37 Download gff for
BO29975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42335-RE | 11..2080 | 17..2086 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:37 Download gff for
BO29975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21760092..21760339 | 1124..1371 | 100 | -> | Plus |
| 3R | 21758774..21759396 | 17..639 | 100 | -> | Plus |
| 3R | 21759464..21759760 | 640..936 | 100 | -> | Plus |
| 3R | 21759849..21760035 | 937..1123 | 100 | -> | Plus |
| 3R | 21760463..21761186 | 1372..2097 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:16 Download gff for
BO29975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17584496..17585118 | 17..639 | 100 | -> | Plus |
| arm_3R | 17585186..17585482 | 640..936 | 100 | -> | Plus |
| arm_3R | 17585571..17585757 | 937..1123 | 100 | -> | Plus |
| arm_3R | 17585814..17586061 | 1124..1371 | 100 | -> | Plus |
| arm_3R | 17586185..17586908 | 1372..2097 | 99 | | Plus |
BO29975.pep Sequence
Translation from 16 to 2113
> BO29975.pep
MSSSIFRAFWLLCSLLICVTNAADYRLEGSVVPSHYNLTIGVLRNSVEPT
IFDGEVSITLRVVGTLEVQQIILHADTLDITECWLLDAAGAQVEAIDISR
LIYEAATQQVRVPLTEAAQPGKNYTLGFKYTGHIRTDMAGFFSASYVERD
TNVTRWLALTQMQRINARLVLPCFDEPALKAQFQLQIVRPNGYQSIANTK
LKETKALSQDRFVDHFKETPVMSTYLLAFMVANYSARGNESEFAVLTRPE
FYDNTEFSYHVGQQVVSAYGELFQSPYAELGNDVLQYASSPRFPHNGMEN
WGLIIYSDDVLIQEPGYSDDWSDKEFAIRIIAHETSHMWFGDSVTFSWWS
YFWLNEAFARYYEYFMAHQLYPDYHLDEQFVVRQMQLIFGTDAQNGTQPM
TSPESEIQTPSQIAYKFSGIAYAKGACIVRMWRNLMGAENFDTAIRSYLQ
QYHLTNTVPYNLFYHLFEHWPKNQDVDLVDFLTDYTEQVGYPMIIVKALQ
GNKVVTVEQSRFLLNKDDGSNATLKYTVPITFTTNLERDFYNLTPYKYLH
KTVNVLWLDFTSPIDWILFNLRQSNYQRVFYDDTLREGLLLAISATNHSG
IPVENRAQIIDDLFNFAQAQYVDYADVFRFLEYLAKEVEYVPWYAVYENL
NTVAKRLTPEQLPDFRIYLSSITAAVFEKLGVGWNAQDTPVVNASFLDH
BO29975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42335-PE | 924 | CG42335-PE | 1..691 | 1..691 | 3646 | 99.9 | Plus |
| CG31198-PA | 940 | CG31198-PA | 36..703 | 20..689 | 1116 | 36.2 | Plus |
| CG8774-PB | 885 | CG8774-PB | 5..651 | 21..684 | 796 | 30.5 | Plus |
| CG8774-PA | 942 | CG8774-PA | 62..708 | 21..684 | 796 | 30.5 | Plus |
| CG14516-PC | 990 | CG14516-PC | 102..726 | 24..649 | 778 | 31 | Plus |
