BO29977.complete Sequence
2938 bp assembled on 2012-04-24
GenBank Submission: KX793766
> BO29977.complete
GAAGTTATCAGTCGACATGGATGACTCGTTTTTCGGCTTTGACACGAATC
TACCGGACGAAGATGGTGGCGATGGACGCATCGTCGAGGCGGAATACGAT
GCCCTCAATGACGAAACCTTTGGATCCGCTATAAATGGCGACTGGGAGGA
AGCCCATGAGACGATGGTACGCCTGGGCGGGAATGGCGAAAGGGTGCGGA
AGCGACCCGCGGAATCTAGTGGAAATACGGATTTTGCCGATCAGGGAAAT
GGTGCCTTCCTGCGACACGCTAATCCGCTATCATCGGCGCCCTCTTCAAG
CGGCTCCACTCCGGCCCCTTTGAATGCCCCCTTCCGACAGTCTCGTCACA
TAGGGGACTCGGACTTGGAGCTAAACATTTCCTCCATGAAGTTGGACGAC
ATGGACCTGTCCTCTTTCACCACTGATAGCGAAGCCGGTGGGCTGAGCAA
CCGCATTAAGCTGGACTCCGGGGTCTGGGGATCACAGCCGTTTCCCAACA
ACCAACATTTGTTCCGCGAGCCTATGCGCAGCGCCTTCAAGCCACAGCAG
CAGCAACATCAGCAGCACCAACCACAACAAATGAAGCCACCGCAGGAAGC
GAATGCCAACTTTGCACTGAATCCACAGCCTTTTCCAAAAATTACAACTC
TCGAGGATATAGAGCGCAATATGATCATTCAGCAGGCCATTCCGAAACAA
CAGCAGCAGAGCCAGCAACAGGCGGAACGCAAAATGTTTGATGATTTTAG
TCTGGGTAACAGGCAGCAGGTGCCTACACCAACCATGTTGCAGCAACAGA
TGTTGCAGCAGCAGCATCATCAGAAACAACAGTCGCAGCAGCAGCCGCCA
CAACAAGCGCAGCACAAGGTACCCCCTGGCTTCTTGGGCACGCCGCACAC
CTCTCCACCGAGGCCAAATTTGGGTTTCCCCGGACCCGAGCTACTGCCCA
CGCCATCGTCGCAGCAACAACTAAACGGTATTGGTGGCAACCGAGTGCCG
CCCGGATTTATTTACCCGCAAGGTCTGCCCGGGAATATTCCGCAATTGCC
CCAGCATCCTCTAATGCAGCAGCACATGCCGCACAACTTTCCACTGCCCG
GCGGCAACCAGCGACCTCTACCCAATCCACAAGCTCTGCCCACGGCCCTG
AACAATTTCGCGATGCATCCAAGCTTCAATGCGATGCGCGCCGCTGGAAT
CCATCCAGGGGCTTTTATGCAACCTCCCCATCCGCACCAGATGCTGCCAC
CGCGAATGCCGCCGCACCCGCTGCAAGCTGCCACAAGTCTATTAGGTCAG
CAGCCACCGAATTCCATGTATAACATGTTCAACATGCGACTAGTGCAAGA
GATCCAGCAAAACCATCCGCTGCTTCAACAGGCTGCTGTTGTACGCCAAA
TGCAACAGAGCAGAGCAGGATCCGTGGCCAGCGATCGTCAGAGATCGCAG
GCGCAACAGCAGCAACAAGGACGACGTCCAGATGGTACAGGAAATTACCC
GCTGGAAGAGTACGATGAATATGCCAACCTAATGAGCACGCGCGACAAGC
ACTGGCTAATCGGAATCCAGCTTTCGCAGCTGAATACGGACACGCCGTAT
ATCGACGACTATTACTACACGGTGTTCAGGGAGCGCAAGGCCCAACAGAA
CGGGCAAATGCGCAACAGTCAGGCGCACAAGGACAACCAGTTGAATCATC
CGCTTACTCAGCCACGCGGCCATGCGCAGCTTATTCTCGTACAGTTGGGC
AACAAGAATGGTACTCGCAATGGACACGGACGTGAGCGACGCAACTCGGA
GAACACCAACAGCACGTCAGGCAACACGAACAATGGATCAGGTGGTAACA
ACAACAACCTGACAGGCTATATATTCTCACCACTGAAGTTCGAGAACTCA
CTGGGAAAGCTACAGTACGGAAGTGTGACAGCTCCGCGAAAAATTATCGA
TGCTGACATTATGAGTGGTGAATCAAATGCCGCTGCTGAAGCCAACGCAA
CTTCTTCATCAAAAAGCTCGACTCCGCTGCCCACCTCCGCGAGCCATGAT
GTAAATCCCAGTAGCATGCGGAAGTCGCGACACATTTTGCTTCTGATTGA
AACACTGTATCGCTATCTGCTGAAGTTGGAGGATTTGGAAAGCCCAGAAG
TGATGGCCACCATTGAGCTGAAAAAGAAAAAGGAAGCCGAACGGATCGCA
GCCCTTGAGCAGCTGGAAATGGCCAATAAAACGCCCGAAGAACGTGCTGC
TGAAGCCGCCAATCCGCAAACCATGAATCCGCAACTAAAGAACAAGTTCA
ACTATGAGGTAGAGACGAAAGCTGCGTTGGTCAATAAATTAAAGGCAGGT
CTGGCCTTCGACAAGGTTATCGCCATGATGAATGTGCGCAAGGGAAAGAT
ACTTATTAGACGCATAATGCCCTTTATTGCGGATCAAAGCATTCGCTGGG
TCGTGTGGAGCGGCGTCTTCTGTTCCCTACAAACAGTGGTGAAAAAGGAC
AAGGACGACGTTGAAGGCGTCTTGTACGCTCTTTACCCAGAGTTTAAAAA
ACACGTTAACAAAGCTACTTTCGAACTCCTAGTGAGCATTTCATCTGCTA
TTACGCTGAATGACAAGAAACTTGCTGGAATTTTTTGCAGTCGCTTTGGA
ATCCTTTCGCTGGTTGCCCTGATACTTCGCGCCGAGGAAATCTACGTCTC
GCGAACTGACGCAACTCTTAGCGAGGAGAACAGGCAAAAGTGGCGAGAAT
TTCTGGCACAGGTTGCATCCTGCCTCAATCGCACTATTCAAAACCAGACC
ATCTCGGCAGCCATTGAGTCGGATGCAATTCAGCCACTTATGGACCACTT
TGAACGGTTTAAAGATCTTAAACTGGATGCACTCTTAGCATTAATAACTG
AAGCCAGGCATCAAATTGATGCAAGCTTTCTAGACCAT
BO29977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patr-1-RB | 2907 | CG5208-PB | 1..2904 | 17..2920 | 14520 | 100 | Plus |
| Patr-1-RA | 2907 | CG5208-PA | 1..2904 | 17..2920 | 14520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patr-1-RB | 4285 | CG5208-RB | 82..2990 | 12..2920 | 14530 | 100 | Plus |
| Patr-1-RA | 3532 | CG5208-RA | 82..2990 | 12..2920 | 14530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17044902..17046431 | 869..2398 | 7650 | 100 | Plus |
| 3R | 32079331 | 3R | 17043858..17044672 | 55..869 | 4075 | 100 | Plus |
| 3R | 32079331 | 3R | 17046851..17047126 | 2645..2920 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 17046547..17046794 | 2397..2644 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 17043645..17043689 | 12..56 | 210 | 97.8 | Plus |
Blast to na_te.dros performed 2014-11-28 04:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2964 | 545..875 | 224 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6897 | 680..855 | 213 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6905 | 692..872 | 202 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6935 | 666..875 | 201 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2659 | 528..864 | 192 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2695 | 540..886 | 192 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6849 | 528..597 | 167 | 72.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 946..1042 | 511..609 | 166 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6902 | 536..733 | 163 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6834 | 528..603 | 161 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2815 | 548..864 | 159 | 55.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1119..1179 | 540..598 | 147 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6872 | 540..610 | 143 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2980 | 528..720 | 142 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6879 | 528..597 | 142 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2627 | 524..721 | 141 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6808 | 528..598 | 136 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1255 | 528..684 | 133 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..3004 | 529..726 | 131 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2474 | 539..580 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6828..6901 | 524..598 | 129 | 65.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3264..3360 | 515..609 | 128 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1135 | 528..598 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6900 | 540..720 | 125 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1510..1594 | 521..603 | 123 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6981..7042 | 543..604 | 121 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1177 | 528..586 | 120 | 68.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8391..8460 | 679..744 | 116 | 67.6 | Plus |
BO29977.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:24 Download gff for
BO29977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 83..2986 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:32 Download gff for
BO29977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 87..2990 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:55:29 Download gff for
BO29977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 87..2990 | 17..2922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:55:29 Download gff for
BO29977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17043650..17043688 | 17..55 | 100 | -> | Plus |
| 3R | 17043859..17044672 | 56..869 | 100 | -> | Plus |
| 3R | 17044903..17046431 | 870..2398 | 100 | -> | Plus |
| 3R | 17046549..17046794 | 2399..2644 | 100 | -> | Plus |
| 3R | 17046851..17047126 | 2645..2922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:32 Download gff for
BO29977.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12869372..12869410 | 17..55 | 100 | -> | Plus |
| arm_3R | 12869581..12870394 | 56..869 | 100 | -> | Plus |
| arm_3R | 12870625..12872153 | 870..2398 | 100 | -> | Plus |
| arm_3R | 12872271..12872516 | 2399..2644 | 100 | -> | Plus |
| arm_3R | 12872573..12872848 | 2645..2922 | 99 | | Plus |
BO29977.pep Sequence
Translation from 16 to 2938
> BO29977.pep
MDDSFFGFDTNLPDEDGGDGRIVEAEYDALNDETFGSAINGDWEEAHETM
VRLGGNGERVRKRPAESSGNTDFADQGNGAFLRHANPLSSAPSSSGSTPA
PLNAPFRQSRHIGDSDLELNISSMKLDDMDLSSFTTDSEAGGLSNRIKLD
SGVWGSQPFPNNQHLFREPMRSAFKPQQQQHQQHQPQQMKPPQEANANFA
LNPQPFPKITTLEDIERNMIIQQAIPKQQQQSQQQAERKMFDDFSLGNRQ
QVPTPTMLQQQMLQQQHHQKQQSQQQPPQQAQHKVPPGFLGTPHTSPPRP
NLGFPGPELLPTPSSQQQLNGIGGNRVPPGFIYPQGLPGNIPQLPQHPLM
QQHMPHNFPLPGGNQRPLPNPQALPTALNNFAMHPSFNAMRAAGIHPGAF
MQPPHPHQMLPPRMPPHPLQAATSLLGQQPPNSMYNMFNMRLVQEIQQNH
PLLQQAAVVRQMQQSRAGSVASDRQRSQAQQQQQGRRPDGTGNYPLEEYD
EYANLMSTRDKHWLIGIQLSQLNTDTPYIDDYYYTVFRERKAQQNGQMRN
SQAHKDNQLNHPLTQPRGHAQLILVQLGNKNGTRNGHGRERRNSENTNST
SGNTNNGSGGNNNNLTGYIFSPLKFENSLGKLQYGSVTAPRKIIDADIMS
GESNAAAEANATSSSKSSTPLPTSASHDVNPSSMRKSRHILLLIETLYRY
LLKLEDLESPEVMATIELKKKKEAERIAALEQLEMANKTPEERAAEAANP
QTMNPQLKNKFNYEVETKAALVNKLKAGLAFDKVIAMMNVRKGKILIRRI
MPFIADQSIRWVVWSGVFCSLQTVVKKDKDDVEGVLYALYPEFKKHVNKA
TFELLVSISSAITLNDKKLAGIFCSRFGILSLVALILRAEEIYVSRTDAT
LSEENRQKWREFLAQVASCLNRTIQNQTISAAIESDAIQPLMDHFERFKD
LKLDALLALITEARHQIDASFLDH
BO29977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patr-1-PB | 968 | CG5208-PB | 1..968 | 1..968 | 5061 | 100 | Plus |
| Patr-1-PA | 968 | CG5208-PA | 1..968 | 1..968 | 5061 | 100 | Plus |
| CG44085-PP | 2246 | CG44085-PP | 284..819 | 171..672 | 186 | 23.2 | Plus |
| ptip-PA | 2294 | CG32133-PA | 702..1139 | 157..575 | 183 | 23.3 | Plus |
| ptip-PA | 2294 | CG32133-PA | 812..1247 | 157..576 | 182 | 24.5 | Plus |
| kto-PA | 2531 | CG8491-PA | 1966..2388 | 177..549 | 181 | 25.8 | Plus |
