BO29979.complete Sequence
523 bp assembled on 2012-04-24
GenBank Submission: KX795544
> BO29979.complete
GAAGTTATCAGTCGACATGTTCATTCCAAAAGCCAATCGTGTCGCCATCT
ACGAGTACCTCTTCAAGGAGGGTGTGCTCGTGGCCAAGAAGGACTCGCCC
ATCCAGAAGCACTCCGAACTGGATAAGATTCCCAATCTGCAAGTCATCAA
GGTGATGCAGTCGCTGAACTCACGTGGCTGGGTCAAGGAGCAGTTTGCCT
GGCGCCACTTCTACTGGTTGCTGACCAACGAGGGCATCGAGGAACTGCGC
CGCTATCTGCACTTGCCCCCGGAGATTGTGCCCTCCACTTTGACGCAAAC
TACTCGATCGAACGCAGTGCGTCCGCGCGGAGGACCAGGAGGACCCGGAG
GAGGATTCGGAGGCGCCTCCAAAACCGATGACGACAGATCGAACTACAGA
CGCGGTCCAGGCGCATATGGAATGGACAAGAAAGGCGATGTGGGTGCCGG
AACCGGACGGGTCGAATATCGTGGCGGTTTCGGTCGTGCTTCTCGCTACG
ACAATGCAAGCTTTCTAGACCAT
BO29979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS10a-RA | 492 | CG12275-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
| RpS10b-RD | 483 | CG14206-PD | 1..269 | 17..285 | 640 | 82.5 | Plus |
| RpS10b-RC | 483 | CG14206-PC | 1..269 | 17..285 | 640 | 82.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS10a-RA | 604 | CG12275-RA | 77..565 | 17..505 | 2445 | 100 | Plus |
| RpS10b-RD | 809 | CG14206-RD | 168..436 | 17..285 | 640 | 82.5 | Plus |
| RpS10b-RC | 1469 | CG14206-RC | 97..365 | 17..285 | 640 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27652836..27653324 | 17..505 | 2445 | 100 | Plus |
| X | 23542271 | X | 19598434..19598702 | 17..285 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:49:55 has no hits.
BO29979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:55 Download gff for
BO29979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 6..489 | 22..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:04 Download gff for
BO29979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 82..565 | 22..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:28 Download gff for
BO29979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10a-RA | 82..565 | 22..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:28 Download gff for
BO29979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27652841..27653324 | 22..507 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:04 Download gff for
BO29979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23478563..23479046 | 22..507 | 99 | | Plus |
BO29979.pep Sequence
Translation from 16 to 523
> BO29979.pep
MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSL
NSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTRSNA
VRPRGGPGGPGGGFGGASKTDDDRSNYRRGPGAYGMDKKGDVGAGTGRVE
YRGGFGRASRYDNASFLDH
BO29979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS10a-PA | 163 | CG12275-PA | 1..163 | 1..163 | 875 | 100 | Plus |
| RpS10b-PD | 160 | CG14206-PD | 1..159 | 1..160 | 611 | 74.4 | Plus |
| RpS10b-PC | 160 | CG14206-PC | 1..159 | 1..160 | 611 | 74.4 | Plus |
| RpS10b-PB | 160 | CG14206-PB | 1..159 | 1..160 | 611 | 74.4 | Plus |
| RpS10b-PE | 160 | CG14206-PE | 1..159 | 1..160 | 611 | 74.4 | Plus |
