BO29983.complete Sequence
1873 bp assembled on 2012-04-24
GenBank Submission: KX794167
> BO29983.complete
GAAGTTATCAGTCGACATGAGACGCGCCGGTTTAATCAAACCGCTGTTGC
GTATAAATAACGAAAAACAACGTGTTTGGAGAAAAAACTACGCTACCCAA
GTGGTTTCCGGCTTGGAGGAGTGCTCACTAGACCCCAAGGAGTATGTGGA
CTTCAAGCGGCAGCTGCGGCAGCTCAACTTGCCCCACAAAGACGGACACA
CGTGCTTGCAGCTGGAGTGTCGCCTCTGCGATCGCAATAGGCAGCCGGTG
ACAAACGCCCAAAAGGGCACCGATCATGGGCTGCTGGCTTACGTAAACAA
GCGGACGGGAGCCTTTATCTGCCCCAATTGCGACGTAAAAACCTCACTGA
CCAGCGCTTTATTATCCTATCAGTTGCCCAAGCCGGTTGGCTATAAGCAA
CCGCTGCAGAGGCAGCCGGTCTATGAATCCCGATTTCCCCACCTGGCCGT
GGTTACTCCCGAGGCCTGTGCAGCTTTGGGAATCAAGGGCTTGAAGGAGG
ACCAACTAAATGCCATAGGAGCACAGTGGGAGCCGCAGCAACAGCTGCTC
CACTTTAAGTTACGCAATGCCGCGCAAGTGGAGGTTGGCGAAAAGGTGTT
ATATCTGGGCGATCGACGGGAGGAGATCTTCCAGAGCAGCTCCAGCTCCG
GGCTGCTGATTCACGGTGCGATGAACAAAACCAAAGCGGTTCTAGTCAGC
AATCTAATTGACTTTATTGTCCTTGCCACACAGAACATTGAAACGCATTG
CGTTGTATGCCTGCCCTACGAACTGAAGACTCTACCACAAGAGTGTCTGC
CCGCCTTGGAACGCTTCAAAGAGCTCATCTTTTGGTTGCACTACGATGCC
AGTCACAGCTGGGATGCAGCTAGAGCTTTTGCGTTAAAGTTGGACGAAAG
GCGATGCCTGTTAATCCGACCTACTGAGACGGAACCTGCGCCACATTTGG
CTCTGCGCCGACGACTCAATCTGCGCCACATCCTGGCCAAAGCGACACCG
GTGCAGCACAAGGCCATCACAACATTCGGAGCAATGCGAAATGACATTCT
CAGCGAGTTGCAAAACATCGAGAAAGTCAATGGAGTAAAGTGGAAGCGCT
TTCCAGTACTGAATAAGCTGCTCAAAGGCCATCGGAGGGGAGAGTTGACA
ATCCTCACAGGACCCACGGGTAGTGGAAAGACAACCTTTATGAGCGAGTA
CTCTCTGGATCTGGCCATGCAGGGCGTAAACACGCTGTGGGGCTCTTTTG
AGATCCGAAACACCCGGCTGGCGGCCACCTTGCTTCGCCAGTATGTGGGC
TACCCGTTGGACGACCGGTTGCATGAGTTTAACCACTGGGCAGCGGAGTT
TGAGCGTTTGCCGCTATACTTTATGACCTTCCACGGACAGCAGCCCCTTA
AGCCGGTTCTGGAAGCCATCGAGCATGCGTCGTATGTGCACGATGTGATG
CACGTGATCATTGACAATCTGCAATTTATGATGGGCGTGTCCACATTTCG
AGGCGACAAGTTCTTTGAACAGGACTCTATTATAGCTGCCTTTCGCTCCT
TTGCCACCAAGCACAATGTACACGTGACACTCGTAATGCATCCGCGCAAG
GAGCGGCAGGAGGACGAGCTGACCACCAGCTCGGTTTTCGGCACAGCAAA
GGCCACCCAAGAAGCGGACAACGTGTTGATCATTCAAGACAAGAGGCTGA
CTTCTGTGCGGGGCAAGAAGTATCTCCAAATTGCCAAGAATCGTTATTCC
GGCGACCTGGGCATCATGCCACTGGAATTCGACAAAGACGGCTTGAGCTA
CTCAACCCAGATCCAAAATGCCAAGCGAAAACGGGAAAAGACGCCATCCG
AGAACGCAAGCTTTCTAGACCAT
BO29983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtDNA-helicase-RA | 1842 | CG5924-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtDNA-helicase-RA | 1965 | CG5924-RA | 28..1866 | 17..1855 | 9195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9891354..9892462 | 1855..747 | 5545 | 100 | Minus |
| 2L | 23513712 | 2L | 9892632..9893070 | 746..308 | 2195 | 100 | Minus |
| 2L | 23513712 | 2L | 9893127..9893419 | 309..17 | 1465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:41:45 has no hits.
BO29983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:22 Download gff for
BO29983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5924-RA | 1..1839 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:28 Download gff for
BO29983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtDNA-helicase-RA | 28..1866 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:55:14 Download gff for
BO29983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtDNA-helicase-RA | 28..1866 | 17..1857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:55:14 Download gff for
BO29983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9893128..9893419 | 17..308 | 100 | | Minus |
| 2L | 9891351..9892462 | 747..1857 | 99 | <- | Minus |
| 2L | 9892632..9893069 | 309..746 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:28 Download gff for
BO29983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9891351..9892462 | 747..1857 | 99 | <- | Minus |
| arm_2L | 9892632..9893069 | 309..746 | 100 | <- | Minus |
| arm_2L | 9893128..9893419 | 17..308 | 100 | | Minus |
BO29983.pep Sequence
Translation from 16 to 1873
> BO29983.pep
MRRAGLIKPLLRINNEKQRVWRKNYATQVVSGLEECSLDPKEYVDFKRQL
RQLNLPHKDGHTCLQLECRLCDRNRQPVTNAQKGTDHGLLAYVNKRTGAF
ICPNCDVKTSLTSALLSYQLPKPVGYKQPLQRQPVYESRFPHLAVVTPEA
CAALGIKGLKEDQLNAIGAQWEPQQQLLHFKLRNAAQVEVGEKVLYLGDR
REEIFQSSSSSGLLIHGAMNKTKAVLVSNLIDFIVLATQNIETHCVVCLP
YELKTLPQECLPALERFKELIFWLHYDASHSWDAARAFALKLDERRCLLI
RPTETEPAPHLALRRRLNLRHILAKATPVQHKAITTFGAMRNDILSELQN
IEKVNGVKWKRFPVLNKLLKGHRRGELTILTGPTGSGKTTFMSEYSLDLA
MQGVNTLWGSFEIRNTRLAATLLRQYVGYPLDDRLHEFNHWAAEFERLPL
YFMTFHGQQPLKPVLEAIEHASYVHDVMHVIIDNLQFMMGVSTFRGDKFF
EQDSIIAAFRSFATKHNVHVTLVMHPRKERQEDELTTSSVFGTAKATQEA
DNVLIIQDKRLTSVRGKKYLQIAKNRYSGDLGIMPLEFDKDGLSYSTQIQ
NAKRKREKTPSENASFLDH
BO29983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtDNA-helicase-PA | 613 | CG5924-PA | 1..613 | 1..613 | 3203 | 100 | Plus |
