BO29990.complete Sequence
1351 bp assembled on 2012-04-24
GenBank Submission: KX797086
> BO29990.complete
GAAGTTATCAGTCGACATGTCGATTCGGTTGGTAGCACTCCTGGCATTGT
TCGCCGCCTTGGCGCATGGCAAACCCGGATACGGTCCCGGAGAGCAGGAC
TGGGGCTACGTAGATGTGCGTCCCGGTGCCCACATGTTCTACTGGCTGTA
CTACACCACCGCCAATGTTTCGAGCTATACCGAAAGACCATTAGCCATTT
GGCTCCAAGGAGGTCCCGGTGCCTCTTCGACGGGGTATGGAAACTTTGAA
GAACTTGGGCCCGTCGATTTGTACGGAGATTGGCGCAGCTGGACCTGGGT
GAAGGACATGAATGTCCTCTTTATTGACAACCCCGTAGGCAGTGGTTTTA
GCTACGTGGACAACACGGCCTTTTACACGGCCACCAATAAGGAGATCGCT
CTAGATTTGGTTGAGCTGATGAAGGGATTCTATACCCTGCATCCAGAGTT
CGAGGAGGTGCCGCTGCATATATTCTGCGAGAGTTACGGTGGAAAGATGG
CGCCGGAGTTTGCACTCGAACTGTACTACGCCAAGAAGCGTGGTGAGGTC
AAGAGCAACCTTACCTCGGTGGCTTTGGGGGATCCATGGACCTCGCCCAT
CGACTCCGTGCTCGCATGGGGACCTTTTCTCAGAGAAATGGGAATCGTGG
ACCACGCGGGATACAATGCCATTCAAGAGGCAGCGAACTTCACGGCTCAG
TTGGTGGAGGAGGAGCGATGGATTCAGGCCACCTATCAGTGGGGCAACAC
CCAGTGGGAGGTGATGAAAGCCTCCAAGGGTGTGGACTTCTACAACGTGC
TGAAGGAGACAAAGGGTGGTCTCTACCAGAGATCAAAGGCCTTGACCTCC
GAAGAACGTCTGTATCGCACCATGGTGAAATACGATATTGATGAGGATCG
AACCAAGTTACTGGAGGATCTGATGCGGGGCCCGGTGGCGGAAACCCTGG
GTATACCTTCGAATGTCATCTGGGGATCGCAGAGTGGGACCACTTTTGAC
ATCCACAGAACGGACTTCATGAAGCCAGTCATCCACATTGTGAACGAATT
GCTGGAGAAGACTCCTCTGAAGGTCGGCGTATTCTCCGGTGGCCTGGATT
TGATTTGCGCCACACCGGGCACCGTCAACTGGATAGCCAAGCTGGACTGG
AGCCGAAAGGACGAGTACCTGGCTGCTCCACGCAATGGCATCACGGTGGA
TCGCATCTTGGAGGGCTATCAAAAGACGGGCGGTAACTTTACCATGTTCT
GGATCAACCGAAGTGGTCACATGGCTCCGGCGGACAACCCTGCGGCTATG
AGTCATGTACTTCGAGAGTTTACGTCATTTGGCGCAAGCTTTCTAGACCA
T
BO29990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32483-RA | 1320 | CG32483-PA | 1..1317 | 17..1333 | 6570 | 99.9 | Plus |
| CG3344-RA | 1341 | CG3344-PA | 85..619 | 86..620 | 890 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32483-RA | 1382 | CG32483-RA | 1..1317 | 17..1333 | 6570 | 99.9 | Plus |
| CG3344-RA | 1480 | CG3344-RA | 175..709 | 86..620 | 890 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 689174..689960 | 854..68 | 3935 | 100 | Minus |
| 3L | 28110227 | 3L | 688588..688881 | 1333..1040 | 1455 | 99.7 | Minus |
| 3L | 28110227 | 3L | 688935..689122 | 1040..853 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 686821..687355 | 620..86 | 890 | 77.8 | Minus |
| 3L | 28110227 | 3L | 690029..690081 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:50:18 has no hits.
BO29990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:57 Download gff for
BO29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1317 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:09 Download gff for
BO29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1317 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:58:38 Download gff for
BO29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32483-RA | 1..1317 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:58:38 Download gff for
BO29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 689174..689959 | 69..854 | 100 | <- | Minus |
| 3L | 690030..690081 | 17..68 | 100 | | Minus |
| 3L | 688586..688880 | 1041..1335 | 98 | <- | Minus |
| 3L | 688935..689120 | 855..1040 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:09 Download gff for
BO29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 688586..688880 | 1041..1335 | 98 | <- | Minus |
| arm_3L | 688935..689120 | 855..1040 | 100 | <- | Minus |
| arm_3L | 689174..689959 | 69..854 | 100 | <- | Minus |
| arm_3L | 690030..690081 | 17..68 | 100 | | Minus |
BO29990.pep Sequence
Translation from 16 to 1351
> BO29990.pep
MSIRLVALLALFAALAHGKPGYGPGEQDWGYVDVRPGAHMFYWLYYTTAN
VSSYTERPLAIWLQGGPGASSTGYGNFEELGPVDLYGDWRSWTWVKDMNV
LFIDNPVGSGFSYVDNTAFYTATNKEIALDLVELMKGFYTLHPEFEEVPL
HIFCESYGGKMAPEFALELYYAKKRGEVKSNLTSVALGDPWTSPIDSVLA
WGPFLREMGIVDHAGYNAIQEAANFTAQLVEEERWIQATYQWGNTQWEVM
KASKGVDFYNVLKETKGGLYQRSKALTSEERLYRTMVKYDIDEDRTKLLE
DLMRGPVAETLGIPSNVIWGSQSGTTFDIHRTDFMKPVIHIVNELLEKTP
LKVGVFSGGLDLICATPGTVNWIAKLDWSRKDEYLAAPRNGITVDRILEG
YQKTGGNFTMFWINRSGHMAPADNPAAMSHVLREFTSFGASFLDH
BO29990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32483-PA | 439 | CG32483-PA | 1..439 | 1..439 | 2361 | 100 | Plus |
| CG3344-PA | 446 | CG3344-PA | 6..446 | 5..439 | 1663 | 70.3 | Plus |
| CG31823-PA | 427 | CG31823-PA | 15..427 | 9..439 | 1122 | 49.9 | Plus |
| CG31821-PB | 427 | CG31821-PB | 5..421 | 2..438 | 911 | 44.1 | Plus |
| CG31821-PA | 427 | CG31821-PA | 5..421 | 2..438 | 911 | 44.1 | Plus |
