BO29992.complete Sequence
970 bp assembled on 2011-09-20
> BO29992.complete
GAAGTTATCAGTCGACATGCTGAACATCGTGTGTAGAGTCTGCGGAAGGC
AGAAAATCTGTGAGAAGAGCCTGAATCTCTTCGATTTGGTCAACCGAAAA
TATCTAAAGCACTTGCACATGATAAGCGGACTAAGATTGGTGGATTTGGA
CGATGTTCCTGGTTTCATGTGCCTTTGCTGTCAGGCGGAACTCAGATCGG
CATTGGCATTCCGGAAGCTTTGCATTAAGACCCAAACTAAATGGCTAACC
ATCGAGGACGACTCTTCGTCGGGTGATGAAGATACCAATGACAATTCGGA
ACTGGAATCGGAAAAATGCGCATTCAGCGATTTTGGGAAAAAGAAAGAAG
GCGAGTTGGTTGAAGAAACTTTTCAGGTACTGATTGAAGAGGAGCCCATG
GACAAAACTCTGAATAGAGATGCGAAAGCGCAGCTGAGGGAAGATGGAAT
AGATGAGAAGTGTGTACCTTCACAAAAGATTATCAAAGTATCAACCAAAC
TGGATGATCAGATTTACATATGCGAGCTGTGCGGGACTCATGCCACATCG
AAACCCACTTTCCAGCGCCACATGAGAAAACACAGAGGCGAACGACCATT
TGGCTGCAAGGATTGTGATGCCAGGTTTCTCTCTGCTGGCGAACTACGTG
CCCACCACCGGGTACATACTGGGGAGCAACCGTTTGCCTGTCGCTTCTGC
GAAAAGCGGTATGTCAGCTACATGGGCCGGCTGATCCACGAGCGGACTCA
CACCAACGATCGACCCTATGTGTGCGAAGAGTGTGGCAAGAAGTTCACCA
CTGCCTACGTCCTAAAGAACCACATGGTCATCCACACGGGCGAGAGGAAT
TTCCGATGCGATATTTGCGATCGCTCCTTCCAGAGAAAGGCGCACCTGGT
AACGCACACCAGATCCATGATGCACCTCCAAAATGTCAAGAAGCAGAAGT
CAGCAAGCTTTCTAGACCAT
BO29992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11762-RA | 939 | CG11762-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
CG8159-RB | 1200 | CG8159-PB | 796..903 | 737..844 | 240 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11762-RA | 1141 | CG11762-RA | 1..941 | 12..952 | 4690 | 99.9 | Plus |
CG8159-RB | 1328 | CG8159-RB | 870..977 | 737..844 | 240 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8725652..8726125 | 137..610 | 2370 | 100 | Plus |
3R | 32079331 | 3R | 8726188..8726530 | 610..952 | 1715 | 100 | Plus |
3R | 32079331 | 3R | 8725479..8725603 | 12..136 | 610 | 99.2 | Plus |
3R | 32079331 | 3R | 8727853..8727960 | 737..844 | 240 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:49:44 has no hits.
BO29992.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:55:31 Download gff for
BO29992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11762-RA | 6..941 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:39 Download gff for
BO29992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11762-RA | 6..941 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:52 Download gff for
BO29992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11762-RA | 6..941 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:52 Download gff for
BO29992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8725484..8725603 | 17..136 | 100 | -> | Plus |
3R | 8725652..8726124 | 137..609 | 100 | -> | Plus |
3R | 8726188..8726530 | 610..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:39 Download gff for
BO29992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4551910..4552252 | 610..954 | 99 | | Plus |
arm_3R | 4551206..4551325 | 17..136 | 100 | -> | Plus |
arm_3R | 4551374..4551846 | 137..609 | 100 | -> | Plus |
BO29992.pep Sequence
Translation from 16 to 970
> BO29992.pep
MLNIVCRVCGRQKICEKSLNLFDLVNRKYLKHLHMISGLRLVDLDDVPGF
MCLCCQAELRSALAFRKLCIKTQTKWLTIEDDSSSGDEDTNDNSELESEK
CAFSDFGKKKEGELVEETFQVLIEEEPMDKTLNRDAKAQLREDGIDEKCV
PSQKIIKVSTKLDDQIYICELCGTHATSKPTFQRHMRKHRGERPFGCKDC
DARFLSAGELRAHHRVHTGEQPFACRFCEKRYVSYMGRLIHERTHTNDRP
YVCEECGKKFTTAYVLKNHMVIHTGERNFRCDICDRSFQRKAHLVTHTRS
MMHLQNVKKQKSASFLDH
BO29992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11762-PA | 312 | CG11762-PA | 1..312 | 1..312 | 1686 | 100 | Plus |
CG8159-PB | 399 | CG8159-PB | 1..334 | 1..309 | 613 | 38.2 | Plus |
ranshi-PA | 346 | CG9793-PA | 5..338 | 5..309 | 599 | 36.1 | Plus |
CG8145-PB | 370 | CG8145-PB | 1..330 | 1..314 | 574 | 36.4 | Plus |
CG8145-PC | 370 | CG8145-PC | 1..330 | 1..314 | 574 | 36.4 | Plus |