Clone BO29993 Report

Search the DGRC for BO29993

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:299
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptSfp26Ad-RA
Protein status:BO29993.pep: Imported from assembly
Sequenced Size:397

Clone Sequence Records

BO29993.complete Sequence

397 bp assembled on 2011-09-15

GenBank Submission: KX797906

> BO29993.complete
GAAGTTATCAGTCGACATGGCCAGCCTCAAGTGGTTAGCTATTCTACAAC
TCTTAATTATTTTCGGTGCTCTTGGGCACGCCGAAGTTGATGAAATTACC
GATGTCGTAAAGGAGAAGCTTTATGAGGCTATCTCCAAAACTGGATCTAC
GATCAAATCCGGATCGGCAAGCTTACAGAGTCTTGATGATGCCGTGCGTA
ACGTTATAAAAATGAAAAAGGGCGCGGCTAAGTCGCTCTTGGATCTAGTA
AGCAATCGTATCTTAAAACCTGAAAAGGACGCACCCGCTTCCCTCTCATC
ATGTGGTGAAGGGGAATTAGTTTGTGAAATCAAAGGGGTACTGGCCGCAG
AATCCACACAGCAACCAAACACCATAACTGCAAGCTTTCTAGACCAT

BO29993.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp26Ad-RB 366 CG42603-PB 1..363 17..379 1815 100 Plus
Sfp26Ad-RA 366 CG42603-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp26Ad-RB 612 CG42603-RB 51..413 17..379 1815 100 Plus
Sfp26Ad-RA 435 CG42603-RA 31..393 17..379 1815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5942822..5943133 379..68 1560 100 Minus
2L 23513712 2L 5943203..5943254 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:43:58 has no hits.

BO29993.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-15 17:34:27 Download gff for BO29993.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp26Ad-RA 10..372 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:29 Download gff for BO29993.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp26Ad-RA 10..372 17..381 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:01 Download gff for BO29993.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp26Ad-RA 31..393 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:01 Download gff for BO29993.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5942820..5943132 69..381 99 <- Minus
2L 5943203..5943254 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:29 Download gff for BO29993.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5942820..5943132 69..381 99 <- Minus
arm_2L 5943203..5943254 17..68 100   Minus

BO29993.pep Sequence

Translation from 16 to 397

> BO29993.pep
MASLKWLAILQLLIIFGALGHAEVDEITDVVKEKLYEAISKTGSTIKSGS
ASLQSLDDAVRNVIKMKKGAAKSLLDLVSNRILKPEKDAPASLSSCGEGE
LVCEIKGVLAAESTQQPNTITASFLDH

BO29993.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp26Ad-PB 121 CG42603-PB 1..121 1..121 588 100 Plus
Sfp26Ad-PA 121 CG42603-PA 1..121 1..121 588 100 Plus