Clone BO30004 Report

Search the DGRC for BO30004

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:300
Well:4
Vector:pDNR-Dual
Protein status:BO30004.pep: Imported from assembly
Sequenced Size:886

Clone Sequence Records

BO30004.complete Sequence

886 bp assembled on 2011-10-18

> BO30004.complete
GAAGTTATCAGTCGACATGAGTTACCGAATCGGCGAGGAAAAACTTGAAG
TATATTACCAGGTATCCCTGGAACTGGTCAGGAAGTGCGGTCCGCTCTTT
TTGGAGGGTTTCCAGAAACCGAAAACCGATTACGAAGTCAAGTCAGCGTT
CTATGACTTGGTCACCGTGTACGACAAGCAAATAGAAGCCACTCTAACAG
ATGGTTTGCTAAAGACCTTTCCGGAATCCAAAATAATAGGCGAAGAAGCT
ATGGCCAACGCCAAAACGCCGCCTGAGTTGACGGATGCCCCCACTTGGAT
CATAGATCCCATTGATGGCACCAACAACTACGTTCGAAAGATCCCCCATT
GCTGTATTTCCGTGGGCTTGGCCATAAACAAAGAGCTGGTGCTGGGGATT
GTGTACAATCCATCTGCAAATGAGTTGTATTCAGCTTGGCAAGGCCACGG
AGCTTATTTAAATGGACAACCCATTGAGGTTTCCAACGCTAAGAAGATAA
ACCAAGCATTGGTGTGCTATGAGATCTCCCTAATCGTGGTGTCTAAGGGG
CGGGACAAGAACGTGAAGCGTCTCTACAAGCTGGCCTCGAGTGCCACTGG
CACCCGCAGCTTTGGATGCGCAGCTCTCACGCTCTGCTATATAGCCGCCG
GCAGATGTGACGCCTATCATGTGGAGAATCTAAAGCCCTGGGATCTGGCT
GGCGGTGCGGTAATCCTCAGGGAAGCCGGTGGCAGGGTATATCACACAAG
CGGTGCAAGATTCGATGTGATGAAACCCGACTGTGTGTGCACCAGCTCTG
AAGAATTGGCCAAAAGTGTAATCCAATTGATAGAAGGAGCCGACCAAATT
AGCGGCTATACTTTTAAAGCAAGCTTTCTAGACCAT

BO30004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17028-RB 855 CG17028-PB 1..852 17..868 4260 100 Plus
CG17028-RA 855 CG17028-PA 1..852 17..868 4260 100 Plus
CG17029-RB 855 CG17029-PB 259..774 275..790 480 72.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17028-RB 893 CG17028-RB 19..871 16..868 4265 100 Plus
CG17028-RA 1140 CG17028-RA 19..871 16..868 4265 100 Plus
CG17029-RB 1167 CG17029-RB 465..980 275..790 480 72.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15978542..15979022 16..496 2405 100 Plus
3L 28110227 3L 15979467..15979735 600..868 1345 100 Plus
3L 28110227 3L 15979302..15979407 495..600 530 100 Plus
3L 28110227 3L 15977334..15977482 275..423 295 79.9 Plus
3L 28110227 3L 15978010..15978248 552..790 280 74.5 Plus
Blast to na_te.dros performed on 2014-11-26 22:14:44 has no hits.

BO30004.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-18 10:25:21 Download gff for BO30004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17028-RB 20..871 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:42 Download gff for BO30004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17028-RA 20..871 17..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:23 Download gff for BO30004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17028-RA 20..871 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:23 Download gff for BO30004.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15978543..15979022 17..496 100 -> Plus
3L 15979304..15979407 497..600 100 -> Plus
3L 15979468..15979735 601..870 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:42 Download gff for BO30004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15971643..15972122 17..496 100 -> Plus
arm_3L 15972404..15972507 497..600 100 -> Plus
arm_3L 15972568..15972835 601..870 99   Plus

BO30004.pep Sequence

Translation from 16 to 886

> BO30004.pep
MSYRIGEEKLEVYYQVSLELVRKCGPLFLEGFQKPKTDYEVKSAFYDLVT
VYDKQIEATLTDGLLKTFPESKIIGEEAMANAKTPPELTDAPTWIIDPID
GTNNYVRKIPHCCISVGLAINKELVLGIVYNPSANELYSAWQGHGAYLNG
QPIEVSNAKKINQALVCYEISLIVVSKGRDKNVKRLYKLASSATGTRSFG
CAALTLCYIAAGRCDAYHVENLKPWDLAGGAVILREAGGRVYHTSGARFD
VMKPDCVCTSSEELAKSVIQLIEGADQISGYTFKASFLDH

BO30004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17028-PB 284 CG17028-PB 1..284 1..284 1485 100 Plus
CG17028-PA 284 CG17028-PA 1..284 1..284 1485 100 Plus
CG17029-PB 284 CG17029-PB 1..284 1..284 1054 69.4 Plus
CG17029-PA 284 CG17029-PA 1..284 1..284 1054 69.4 Plus
CG17026-PA 284 CG17026-PA 5..277 7..277 638 44.3 Plus