BO30004.complete Sequence
886 bp assembled on 2011-10-18
> BO30004.complete
GAAGTTATCAGTCGACATGAGTTACCGAATCGGCGAGGAAAAACTTGAAG
TATATTACCAGGTATCCCTGGAACTGGTCAGGAAGTGCGGTCCGCTCTTT
TTGGAGGGTTTCCAGAAACCGAAAACCGATTACGAAGTCAAGTCAGCGTT
CTATGACTTGGTCACCGTGTACGACAAGCAAATAGAAGCCACTCTAACAG
ATGGTTTGCTAAAGACCTTTCCGGAATCCAAAATAATAGGCGAAGAAGCT
ATGGCCAACGCCAAAACGCCGCCTGAGTTGACGGATGCCCCCACTTGGAT
CATAGATCCCATTGATGGCACCAACAACTACGTTCGAAAGATCCCCCATT
GCTGTATTTCCGTGGGCTTGGCCATAAACAAAGAGCTGGTGCTGGGGATT
GTGTACAATCCATCTGCAAATGAGTTGTATTCAGCTTGGCAAGGCCACGG
AGCTTATTTAAATGGACAACCCATTGAGGTTTCCAACGCTAAGAAGATAA
ACCAAGCATTGGTGTGCTATGAGATCTCCCTAATCGTGGTGTCTAAGGGG
CGGGACAAGAACGTGAAGCGTCTCTACAAGCTGGCCTCGAGTGCCACTGG
CACCCGCAGCTTTGGATGCGCAGCTCTCACGCTCTGCTATATAGCCGCCG
GCAGATGTGACGCCTATCATGTGGAGAATCTAAAGCCCTGGGATCTGGCT
GGCGGTGCGGTAATCCTCAGGGAAGCCGGTGGCAGGGTATATCACACAAG
CGGTGCAAGATTCGATGTGATGAAACCCGACTGTGTGTGCACCAGCTCTG
AAGAATTGGCCAAAAGTGTAATCCAATTGATAGAAGGAGCCGACCAAATT
AGCGGCTATACTTTTAAAGCAAGCTTTCTAGACCAT
BO30004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17028-RB | 855 | CG17028-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
CG17028-RA | 855 | CG17028-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG17029-RB | 855 | CG17029-PB | 259..774 | 275..790 | 480 | 72.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17028-RB | 893 | CG17028-RB | 19..871 | 16..868 | 4265 | 100 | Plus |
CG17028-RA | 1140 | CG17028-RA | 19..871 | 16..868 | 4265 | 100 | Plus |
CG17029-RB | 1167 | CG17029-RB | 465..980 | 275..790 | 480 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15978542..15979022 | 16..496 | 2405 | 100 | Plus |
3L | 28110227 | 3L | 15979467..15979735 | 600..868 | 1345 | 100 | Plus |
3L | 28110227 | 3L | 15979302..15979407 | 495..600 | 530 | 100 | Plus |
3L | 28110227 | 3L | 15977334..15977482 | 275..423 | 295 | 79.9 | Plus |
3L | 28110227 | 3L | 15978010..15978248 | 552..790 | 280 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:14:44 has no hits.
BO30004.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-18 10:25:21 Download gff for
BO30004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17028-RB | 20..871 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:42 Download gff for
BO30004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17028-RA | 20..871 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:23 Download gff for
BO30004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17028-RA | 20..871 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:23 Download gff for
BO30004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15978543..15979022 | 17..496 | 100 | -> | Plus |
3L | 15979304..15979407 | 497..600 | 100 | -> | Plus |
3L | 15979468..15979735 | 601..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:42 Download gff for
BO30004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15971643..15972122 | 17..496 | 100 | -> | Plus |
arm_3L | 15972404..15972507 | 497..600 | 100 | -> | Plus |
arm_3L | 15972568..15972835 | 601..870 | 99 | | Plus |
BO30004.pep Sequence
Translation from 16 to 886
> BO30004.pep
MSYRIGEEKLEVYYQVSLELVRKCGPLFLEGFQKPKTDYEVKSAFYDLVT
VYDKQIEATLTDGLLKTFPESKIIGEEAMANAKTPPELTDAPTWIIDPID
GTNNYVRKIPHCCISVGLAINKELVLGIVYNPSANELYSAWQGHGAYLNG
QPIEVSNAKKINQALVCYEISLIVVSKGRDKNVKRLYKLASSATGTRSFG
CAALTLCYIAAGRCDAYHVENLKPWDLAGGAVILREAGGRVYHTSGARFD
VMKPDCVCTSSEELAKSVIQLIEGADQISGYTFKASFLDH
BO30004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17028-PB | 284 | CG17028-PB | 1..284 | 1..284 | 1485 | 100 | Plus |
CG17028-PA | 284 | CG17028-PA | 1..284 | 1..284 | 1485 | 100 | Plus |
CG17029-PB | 284 | CG17029-PB | 1..284 | 1..284 | 1054 | 69.4 | Plus |
CG17029-PA | 284 | CG17029-PA | 1..284 | 1..284 | 1054 | 69.4 | Plus |
CG17026-PA | 284 | CG17026-PA | 5..277 | 7..277 | 638 | 44.3 | Plus |