Clone BO30027 Report

Search the DGRC for BO30027

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:300
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG13239-RA
Protein status:BO30027.pep: Imported from assembly
Sequenced Size:490

Clone Sequence Records

BO30027.complete Sequence

490 bp assembled on 2012-04-24

GenBank Submission: KX794819

> BO30027.complete
GAAGTTATCAGTCGACATGGCGCTCAGCTCGACTGTTGTCTGTCTTCTCG
CCGGTTTGCTTCTCCTCAGTCTCGCGCGGGCAGATGTGGGCGTGGCCACG
CAGCGTCTTCGCCCAGCGGATCAGCAGAAATCGGCCCTGTATCCAGCAGC
CGGCTTTAAGCCCTCTAGACAGTTTGGCCTTCCGGCAACCGACCAGCAAC
CGAAATCCGCTCGCCTTGTGGCCAACAGTGAAGCGCAGGAGGATCTCGAC
GACGCCGCCGAGGAGGTGGAGGTGACGCAACCAAAGACAGTTTCTGTGCC
ACGCCTAGTTCCTGCTCCAGGGCCAGCATTACCGGTAACTCCCACCATCG
CATACTATCCGGCCGAAGCCGTGGGATTCGTCCAGCCATCAACTTTCGCC
AAGTTCATCGGTGGCCCACAGCAGGCTGCACCATATGTAGCTGCGTCGCA
GTACTACCAAGCCTATTTTGGAGCAAGCTTTCTAGACCAT

BO30027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13239-RA 459 CG13239-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13239-RA 704 CG13239-RA 1..456 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22860787..22861242 17..472 2280 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:45:23 has no hits.

BO30027.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:37 Download gff for BO30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13239-RA 1..456 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:07 Download gff for BO30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13239-RA 1..456 17..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:33 Download gff for BO30027.complete
Subject Subject Range Query Range Percent Splice Strand
CG13239-RA 1..456 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:33 Download gff for BO30027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22860787..22861242 17..474 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:07 Download gff for BO30027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22853887..22854342 17..474 99   Plus

BO30027.pep Sequence

Translation from 16 to 490

> BO30027.pep
MALSSTVVCLLAGLLLLSLARADVGVATQRLRPADQQKSALYPAAGFKPS
RQFGLPATDQQPKSARLVANSEAQEDLDDAAEEVEVTQPKTVSVPRLVPA
PGPALPVTPTIAYYPAEAVGFVQPSTFAKFIGGPQQAAPYVAASQYYQAY
FGASFLDH

BO30027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13239-PA 152 CG13239-PA 1..152 1..152 765 100 Plus