BO30066.complete Sequence
877 bp assembled on 2011-09-15
GenBank Submission: KX798705
> BO30066.complete
GAAGTTATCAGTCGACATGTCAAACTTCAATTGTTCTAAACTCTTGGTCG
CACTTGTGTTGACCAGCAGCTACGTTTTGGCATCAGAAAAGTGCATTTAT
TGTCGGGATATAAACTGCCAAAGGAGCAGCTATGATGCGGATGAACAATG
CTCAGAGAAGTTGGATGCCTGCGTTAGTGTTTTTAAGGCAGGCGTAATTC
AGGCCCAAGGATGTCTGGAAAGTCTCGAAGATGATTGGCGAGAAAAATGC
GAGGATAAAGATAAAGGAAATGAAATCGATTGCGAGATATGTGTAACCGA
AAGATGCAACAACGTCGCAGCCAAAAGGACTAGCTGTATTCAGTGCAACA
ATACAGAGGACGCACAGTGTGCTGAATCTCCCGGGCTACTAACGGCTGTA
CAATGTCCTATTGCTAGATCTGGCAGAAGTTTTTGCTATGCCAGTTTGGT
TGGAGACGATTTGAAAAGGGGGTGCTCCCTGACTCTTTCAGATCAAGTCA
AATGCCTGGCTGATCCAAATTGCCACTTGTGCGATCCTTTGGAACAACCA
CACTGCAATGATCAAATTGTAAGGGCAGATGATTCACCAACCACCACTCA
GGAACCGACGGAATCTACAAGTTCTTCAACGGAGTCCACGCCTAGTTCAA
CAATGACAACTGAATCATCATCAAGTTCACCAGAAAGTTCAACAACAAGT
TCAACAACAAATTCACCAGAAACTACACAATCCACCACAGAACCTTCGAC
AACCGAAGAGGTTCCAACCACAACCGATAAACCCAATTCGGCATTCGGTT
TGCATGCTTCCGTATTGCTGATCTTTGCCCAATTGGCTTTGTGCTTTTAT
AAGCCACTTGCAAGCTTTCTAGACCAT
BO30066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34040-RA | 846 | CG34040-PA | 1..843 | 17..859 | 4200 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34040-RA | 980 | CG34040-RA | 45..887 | 17..859 | 4200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21832594..21833096 | 859..357 | 2500 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21833165..21833507 | 359..17 | 1715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:37:37 has no hits.
BO30066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-15 17:23:08 Download gff for
BO30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34040-RA | 1..843 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:16 Download gff for
BO30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34040-RA | 45..887 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:11 Download gff for
BO30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34040-RA | 45..887 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:11 Download gff for
BO30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21832592..21833094 | 359..861 | 99 | <- | Minus |
| 2R | 21833166..21833507 | 17..358 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:16 Download gff for
BO30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17720097..17720599 | 359..861 | 99 | <- | Minus |
| arm_2R | 17720671..17721012 | 17..358 | 100 | | Minus |
BO30066.pep Sequence
Translation from 16 to 877
> BO30066.pep
MSNFNCSKLLVALVLTSSYVLASEKCIYCRDINCQRSSYDADEQCSEKLD
ACVSVFKAGVIQAQGCLESLEDDWREKCEDKDKGNEIDCEICVTERCNNV
AAKRTSCIQCNNTEDAQCAESPGLLTAVQCPIARSGRSFCYASLVGDDLK
RGCSLTLSDQVKCLADPNCHLCDPLEQPHCNDQIVRADDSPTTTQEPTES
TSSSTESTPSSTMTTESSSSSPESSTTSSTTNSPETTQSTTEPSTTEEVP
TTTDKPNSAFGLHASVLLIFAQLALCFYKPLASFLDH
BO30066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34040-PA | 281 | CG34040-PA | 1..281 | 1..281 | 1487 | 100 | Plus |
| CG4363-PA | 199 | CG4363-PA | 13..180 | 11..181 | 314 | 35.3 | Plus |
| CG4377-PA | 231 | CG4377-PA | 34..186 | 23..174 | 286 | 36.3 | Plus |
| CG13492-PD | 2979 | CG13492-PD | 1538..1772 | 26..256 | 172 | 28 | Plus |
| CG15347-PA | 214 | CG15347-PA | 5..173 | 9..173 | 151 | 25.6 | Plus |
