BO30104.complete Sequence
2572 bp assembled on 2011-10-14
GenBank Submission: KX796890
> BO30104.complete
GAAGTTATCAGTCGACATGACATCTCCCTATGGATACAGTAAGCCCACCT
TTATGATAACGGACCACACTCGCGATCCGTATCATCTGCAGCCGGGTGAT
GACGACGACGATCGGGATGAGGATGAGGAGCGTCAGACGAAGCTGCAGGA
GATCATCAGTTGGCTGCACTTGAATGCCAAGCATCGCAGCAAATGCGAAG
TAACAGAAGGTGCCTTACAGGTCTGGCGGACCCTGCCGGAGCGCATTCGT
CAGGATCCCAGTCTAGCCTCCTTTCGCCAGGAGCACGAACGTCTGCATGG
CGATGTGGACCAGCTGCACGCGGAGGAGTCGGAATTGCGTGTGCAGAATG
GACACCACGAGGAGACGGCGCTGGCCAACCAGCCATTCACACAGATCGGG
ATCAATGTGACGAACGAGGCGGGTCAGGTGCGGGTGCTCGATGGCAGGGA
TCTGGAGAATAACAACGATGATCAACACGACGAGGCCGAGCCGCATGCCA
AGAGTTTGATACGAAAGTATCTTATCTGGTTTAAGATAGCCATACTCCTG
GTGGTCTGGTGCGTCTTCACCGCCTTCCTGATGTCCAACAACGAGCATGT
GGACCAACTGAGCCTCATTAGTGTTCCTAGGAATAGCTCACCCAGAGTAT
TTCCCATTGCCACCGCCAGTCTGCAGAGGATTGGCCTGGGCCTGCGCGGA
CCCTTCCGCCTGCAGGAGAACGAACTGGCCATTAACGCGAGTGTTCCACT
GCCCCTGCTCCAGGTGCAGGTGATGCGCAGCTATTTCGATGGCGAGGGCA
TGGAGATCTACATCGAGAACGCCAGCCAGGTGTGGCAACTGGACGTGGTC
TATCCCGATCTGATAGACGCCACCAGGGATACGAAGAAGCAGCGTACCTT
CGAGCTGAGTCCCACTGATCCCTTATGGTTGGCCCAGGCCAATCGCACGG
AGCTGAGCTTCGAGTTCACCAGCTCCATTGAGGGCGAATTGCCGCTCCAA
CTGAATGTGGATGAGTCGCCCATCTATAAGCGGGATGGAGTCATCTATGC
TGCGGCTGTGCTCTGCGGCTTGTACGTGATGATCATCTGGGAGATTGTGA
ATCGAACCTTTGCTGCCATCATCGCATCCACCTTGTCGGTTGGTATACTG
GCTGCACTGAACTCCAGGCCCTCGATGGCCACCATCATGGGTTGGATTGA
TGTGGAGACACTGCTGCTGCTCTTCGGCATGATGATTCTGGTGGCCATTC
TCTCCGAGACGGGAGTCTTTGACTATCTGGCTGTGTATGCCTACAAGATA
ACCAACGGACATGTTTGGCCACTCATCAATTGCCTCTGCCTGTTCACCGC
TGTCCTGTCGTCCTTCCTGGACAATGTGACCACCGTGCTGCTGATGACCC
CGGTGACGATACGACTCTGCGAGGTCATGTGCCTCAATCCGGTGCCCATA
CTCATGTGCATGGTCATCTACTCGAACATTGGCGGTGCACTGACTCCAGT
GGGGGATCCGCCCAATGTCATCATAGCCTCGAATAGCTACATATCCAAAA
ATGGCGTCAATTTTGCTGTCTTCACCTTGCACATGCTGCCCGGAGTTCTG
CTGGTGATGGTGCAGACCTATATCCAGTTGCGTTTCAAGTTTCGCAACAT
CAGTGATCTGCAGTTCAAGGACTCGCCGGAGGTGGAGGAACTGCGTCACG
AGATACACGTATGGAAGCGGGCAGCCGCCAGTCTATCTGCCTATTCCAAG
GATGAGGAACTGGTGCGGCAGACACTGATGAAGAAGGTGAATCGCTTGAA
GAGAAGCCTCAAGAAACGCATGACGGCGGTCATAGAACCGGCACCCAATT
ACCAACAAACTCTGGCCAATCTTCAGGCAAAGTACCCCATTCGCAACAAA
CCGCTGCTGATCAAGTGTTCGGCCGCCTTGGTCTTTGTGATCAGTTTGTT
TTTCCTGCACTCGGTACCCGAACTCCAGAGACTGTCTTTAGGATGGACCG
CTCTGCTGGGTGCCATATTCCTCATCATTCTGGCGGACATCGAGGACATG
GAGGCCATACTGGCACGCGTGGAATGGTCCACGCTGCTCTTCTTCGCAGC
TCTGTTTATTCTCATGGAAGCCCTGACGGAACTGGGACTGATTGAGTGGA
TCGGCAACATGACAGAGGGCATTATCCTGGGAGTTGGCGAGGATCGGCGA
CTGATGGTGGCCATTTTGATCATTCTATGGGTTTCCGCTGTGGCTTCCGC
TTTTGTGGACAACATACCGCTGACCACGATGATGGTCAAGATCACCATAT
CACTGGCGCAGAATAGCACCTTGAATCTGCCACTACAGCCTCTGGTTTGG
GCCCTGGCCTTGGGCGCCTGTTTGGGAGGCAATGGCACTCTGATCGGAGC
CTCTGCCAATGTGGTTTGTGCCGGCGTGGCGGAGCAGCACGGCTACAAGT
TCACCTTCCTGCAGTTCTTCAAAGTTGGATTTCCCATCATGATCGGCAGC
ATCATTGTCACCACGGGCTATCTGCTCGTTTCGCATTCGCTGTTCGCGTG
GCATGCAAGCTTTCTAGACCAT
BO30104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe1-RJ | 2541 | CG12787-PJ | 1..2538 | 17..2554 | 12675 | 100 | Plus |
| hoe1-RC | 2541 | CG12787-PC | 1..2538 | 17..2554 | 12675 | 100 | Plus |
| hoe1-RI | 2439 | CG12787-PI | 78..2436 | 196..2554 | 11780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe1-RJ | 3422 | CG12787-RJ | 293..2830 | 17..2554 | 12675 | 100 | Plus |
| hoe1-RC | 3340 | CG12787-RC | 211..2748 | 17..2554 | 12675 | 100 | Plus |
| hoe1-RI | 3462 | CG12787-RI | 673..3031 | 196..2554 | 11780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4910468..4911513 | 1553..508 | 5215 | 99.9 | Minus |
| 2L | 23513712 | 2L | 4909676..4910027 | 2232..1881 | 1760 | 100 | Minus |
| 2L | 23513712 | 2L | 4910083..4910412 | 1882..1553 | 1650 | 100 | Minus |
| 2L | 23513712 | 2L | 4931914..4932092 | 195..17 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 4909475..4909624 | 2379..2230 | 750 | 100 | Minus |
| 2L | 23513712 | 2L | 4911722..4911868 | 448..302 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 4912672..4912779 | 302..195 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 4909315..4909410 | 2472..2377 | 480 | 100 | Minus |
| 2L | 23513712 | 2L | 4909173..4909254 | 2554..2473 | 410 | 100 | Minus |
| 2L | 23513712 | 2L | 4911581..4911645 | 508..444 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3106..3166 | 1556..1496 | 125 | 67.2 | Minus |
BO30104.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:21 Download gff for
BO30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 205..2742 | 17..2556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:01 Download gff for
BO30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 211..2748 | 17..2556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:11 Download gff for
BO30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RC | 211..2748 | 17..2556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:11 Download gff for
BO30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4911581..4911641 | 448..508 | 100 | <- | Minus |
| 2L | 4911723..4911867 | 303..447 | 100 | <- | Minus |
| 2L | 4912672..4912778 | 196..302 | 100 | <- | Minus |
| 2L | 4931914..4932092 | 17..195 | 100 | | Minus |
| 2L | 4909170..4909254 | 2473..2556 | 97 | <- | Minus |
| 2L | 4909315..4909408 | 2379..2472 | 100 | <- | Minus |
| 2L | 4909476..4909623 | 2231..2378 | 100 | <- | Minus |
| 2L | 4909678..4910025 | 1883..2230 | 100 | <- | Minus |
| 2L | 4910083..4910412 | 1553..1882 | 100 | <- | Minus |
| 2L | 4910469..4911512 | 509..1552 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:01 Download gff for
BO30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4909170..4909254 | 2473..2556 | 97 | <- | Minus |
| arm_2L | 4909315..4909408 | 2379..2472 | 100 | <- | Minus |
| arm_2L | 4909476..4909623 | 2231..2378 | 100 | <- | Minus |
| arm_2L | 4910083..4910412 | 1553..1882 | 100 | <- | Minus |
| arm_2L | 4909678..4910025 | 1883..2230 | 100 | <- | Minus |
| arm_2L | 4910469..4911512 | 509..1552 | 99 | <- | Minus |
| arm_2L | 4911581..4911641 | 448..508 | 100 | <- | Minus |
| arm_2L | 4911723..4911867 | 303..447 | 100 | <- | Minus |
| arm_2L | 4912672..4912778 | 196..302 | 100 | <- | Minus |
| arm_2L | 4931914..4932092 | 17..195 | 100 | | Minus |
BO30104.pep Sequence
Translation from 16 to 2572
> BO30104.pep
MTSPYGYSKPTFMITDHTRDPYHLQPGDDDDDRDEDEERQTKLQEIISWL
HLNAKHRSKCEVTEGALQVWRTLPERIRQDPSLASFRQEHERLHGDVDQL
HAEESELRVQNGHHEETALANQPFTQIGINVTNEAGQVRVLDGRDLENNN
DDQHDEAEPHAKSLIRKYLIWFKIAILLVVWCVFTAFLMSNNEHVDQLSL
ISVPRNSSPRVFPIATASLQRIGLGLRGPFRLQENELAINASVPLPLLQV
QVMRSYFDGEGMEIYIENASQVWQLDVVYPDLIDATRDTKKQRTFELSPT
DPLWLAQANRTELSFEFTSSIEGELPLQLNVDESPIYKRDGVIYAAAVLC
GLYVMIIWEIVNRTFAAIIASTLSVGILAALNSRPSMATIMGWIDVETLL
LLFGMMILVAILSETGVFDYLAVYAYKITNGHVWPLINCLCLFTAVLSSF
LDNVTTVLLMTPVTIRLCEVMCLNPVPILMCMVIYSNIGGALTPVGDPPN
VIIASNSYISKNGVNFAVFTLHMLPGVLLVMVQTYIQLRFKFRNISDLQF
KDSPEVEELRHEIHVWKRAAASLSAYSKDEELVRQTLMKKVNRLKRSLKK
RMTAVIEPAPNYQQTLANLQAKYPIRNKPLLIKCSAALVFVISLFFLHSV
PELQRLSLGWTALLGAIFLIILADIEDMEAILARVEWSTLLFFAALFILM
EALTELGLIEWIGNMTEGIILGVGEDRRLMVAILIILWVSAVASAFVDNI
PLTTMMVKITISLAQNSTLNLPLQPLVWALALGACLGGNGTLIGASANVV
CAGVAEQHGYKFTFLQFFKVGFPIMIGSIIVTTGYLLVSHSLFAWHASFL
DH
BO30104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe1-PJ | 846 | CG12787-PJ | 1..846 | 1..846 | 4339 | 100 | Plus |
| hoe1-PC | 846 | CG12787-PC | 1..846 | 1..846 | 4339 | 100 | Plus |
| hoe1-PI | 812 | CG12787-PI | 10..812 | 49..846 | 4007 | 98.4 | Plus |
| hoe1-PE | 812 | CG12787-PE | 10..812 | 49..846 | 4007 | 98.4 | Plus |
| hoe1-PD | 812 | CG12787-PD | 10..812 | 49..846 | 4007 | 98.4 | Plus |
