BO30107.complete Sequence
2032 bp assembled on 2011-10-14
GenBank Submission: KX796081
> BO30107.complete
GAAGTTATCAGTCGACATGTCATCGATCTCGGCGCAGGGCGTGGTCGAGC
GAGCATCCGCGGAGTTGTCGAAGCGGATCAATGGCCTGGGCCTGCGCTCG
AAGCACCATCATAGCAGCACATCCAGTGGTGCTGGTGGCGCCGGCGATGC
TGCATCCCCGGCAGGAGCCACGCCCACTCCGGCAGCGCCCAGCGGCAAGA
CGTCGGTGATGGAGCGCGTAACGAACGCCCTGTGCGGCGGTGGCAACTCA
AATTCTAACTCAGGATCGAATAGCTCCAATAGCAACACCTCTTCAGCGTC
TGCCACCGCTGCCACATCGCCCGCCAGCAACGCCAATCCTCCACAGACGC
CGGACAAACCGTCGCGTGGCAGTAGCCCCAGTCCCGGCGGTATCACAATG
CCAGGTGGCCAGTCGCAGGTCCAGAACTCCACACACCACCTCCTGCAGCA
GCAACAACAGCAACAGCAGCATATGCAGCTGCAACAATCGCAGCAGCAGC
ATCTCCAGCTGCAAGCCTCCACGCTGATCAACTCCAACCACCATGTGATG
GTGGGTCCTGCTCCGCCCACTGGCATGCCTCTGGGTGCCCCGCCCACGCC
GACAGTGAAGTCCATTGCCAAGCAGATGAACATAACCATACCGGGTGGCG
GAGTAAATCCCGGTTCGCCCACCTTCAGCACCATGGGCATGGTGGCCGCC
CAGAAGGCGGCGGCCAGTGCTGGAGGTACACCGTTGCAGTTGCGGAAACA
ACTGCCCAATCCTCACCTGCACCATCCGTATGGCAGTATGGGCATCAACG
CAGCATCGCCGCTGATCATGCAACACCAGCTCCACCCGCCGCCTATCCAC
AGCATCGAGCAGCTGATGCTCGACGATCGCTTTCTGAGCCGCTTCTTCCA
GTACTTCTCCCCCTACGAACGGCGCATCCTTGCCCAGGTGTGCATCAAGT
GGCGGGACACACTGTACCGCAGTCCGCGCTACTGGAGCGGCCTGTTGCCC
ACGCTGCAGTGCCGCGAGCTGCGCCAAATGCCAGGCTGCGATCGCGGCAA
ACTCTACAACTCGCTCATCCGGCGCGGATTCCACGCTCTCGGACTGGTCG
GCGCCTCCGACGAAGACGCCCTGGATGTCGTCCACTCCTTCCCCCTCGCA
TCCAAGCATGTCCACTCGCTCAGTCTGCGCTGCTCCTCGATTAGCGACCG
GGGACTGGAGACCCTGCTTGACCACCTGCAGAGTTTGTTTGAACTGGAGC
TGGCTGGCTGCAACGAGGTGACCGAGGCGGGACTGTGGGCGTGTCTAACG
CCCCGAATCGTATCCCTATCCCTGGCGGACTGCATCAACATCGCGGACGA
GGCGGTGGGCGCGGTGGCCCAGCTCCTGCCCTCCCTCTACGAGTTCTCGC
TGCAGGCTTACCACGTCACGGATGCGGCTCTCGGCTACTTCTCGCCCAAA
CAGAGCCACAGCCTCAGCATCCTGCGACTGCAGTCGTGCTGGGAACTAAC
CAACCATGGCATCGTTAATATCGTGCACTCCCTGCCGCATCTCACGGTGC
TAAGCCTCTCCGGCTGCAGCAAACTGACGGATGATGGAGTGGAGCTGATT
GCCGAGAACCTGCAGAAGCTGCGCGCCCTGGACCTGTCCTGGTGTCCCCG
CATCACGGACGCCTCGCTCGAGTATATCGCCTGTGATCTGAACCAGCTGG
AGGAGCTGACGCTGGATAGGTGTGTGCACATAACGGACATTGGCGTGGGA
TACATCTCCACAATGCTATCGCTGACCGCCCTCTTCCTGCGCTGGTGCTC
CCAGGTGCGCGACTTCGGGCTGCAGCACCTCTGCTCCATGCGGAACCTCC
AGGTGCTTTCCCTCGCCGGCTGTCCGCTGCTTACCTCGTCGGGTCTGTCC
AGCCTGATCCAGCTGAGGCATCTGCAGGAGCTGGAACTGACCAACTGCCC
GGGTGCGTCGCACGAGCTGTTTGACTACCTGAAGGAGCACCTGCCTCGCT
GCCTGATCATCGAAGCAAGCTTTCTAGACCAT
BO30107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32085-RA | 2001 | CG32085-PA | 1..1998 | 17..2014 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32085-RA | 3030 | CG32085-RA | 577..2574 | 17..2014 | 9990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11674268..11675482 | 1231..17 | 6075 | 100 | Minus |
| 3L | 28110227 | 3L | 11650973..11651269 | 2014..1718 | 1485 | 100 | Minus |
| 3L | 28110227 | 3L | 11653915..11654114 | 1722..1523 | 1000 | 100 | Minus |
| 3L | 28110227 | 3L | 11668430..11668610 | 1407..1227 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 11668195..11668315 | 1523..1403 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:33:08 has no hits.
BO30107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:26 Download gff for
BO30107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32085-RA | 573..2570 | 17..2016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:47 Download gff for
BO30107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32085-RA | 577..2574 | 17..2016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:49 Download gff for
BO30107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32085-RA | 577..2574 | 17..2016 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:49 Download gff for
BO30107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11653918..11654113 | 1524..1719 | 100 | <- | Minus |
| 3L | 11668195..11668312 | 1406..1523 | 100 | <- | Minus |
| 3L | 11668432..11668605 | 1232..1405 | 100 | <- | Minus |
| 3L | 11650971..11651267 | 1720..2016 | 99 | <- | Minus |
| 3L | 11674268..11675482 | 17..1231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:47 Download gff for
BO30107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11644071..11644367 | 1720..2016 | 99 | <- | Minus |
| arm_3L | 11647018..11647213 | 1524..1719 | 100 | <- | Minus |
| arm_3L | 11661295..11661412 | 1406..1523 | 100 | <- | Minus |
| arm_3L | 11661532..11661705 | 1232..1405 | 100 | <- | Minus |
| arm_3L | 11667368..11668582 | 17..1231 | 100 | | Minus |
BO30107.pep Sequence
Translation from 16 to 2032
> BO30107.pep
MSSISAQGVVERASAELSKRINGLGLRSKHHHSSTSSGAGGAGDAASPAG
ATPTPAAPSGKTSVMERVTNALCGGGNSNSNSGSNSSNSNTSSASATAAT
SPASNANPPQTPDKPSRGSSPSPGGITMPGGQSQVQNSTHHLLQQQQQQQ
QHMQLQQSQQQHLQLQASTLINSNHHVMVGPAPPTGMPLGAPPTPTVKSI
AKQMNITIPGGGVNPGSPTFSTMGMVAAQKAAASAGGTPLQLRKQLPNPH
LHHPYGSMGINAASPLIMQHQLHPPPIHSIEQLMLDDRFLSRFFQYFSPY
ERRILAQVCIKWRDTLYRSPRYWSGLLPTLQCRELRQMPGCDRGKLYNSL
IRRGFHALGLVGASDEDALDVVHSFPLASKHVHSLSLRCSSISDRGLETL
LDHLQSLFELELAGCNEVTEAGLWACLTPRIVSLSLADCINIADEAVGAV
AQLLPSLYEFSLQAYHVTDAALGYFSPKQSHSLSILRLQSCWELTNHGIV
NIVHSLPHLTVLSLSGCSKLTDDGVELIAENLQKLRALDLSWCPRITDAS
LEYIACDLNQLEELTLDRCVHITDIGVGYISTMLSLTALFLRWCSQVRDF
GLQHLCSMRNLQVLSLAGCPLLTSSGLSSLIQLRHLQELELTNCPGASHE
LFDYLKEHLPRCLIIEASFLDH
BO30107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32085-PA | 666 | CG32085-PA | 1..666 | 1..666 | 3469 | 100 | Plus |
| Ppa-PC | 538 | CG9952-PC | 108..532 | 227..641 | 390 | 28.9 | Plus |
| Ppa-PA | 538 | CG9952-PA | 108..532 | 227..641 | 390 | 28.9 | Plus |
| Ppa-PB | 562 | CG9952-PB | 108..532 | 227..641 | 390 | 28.9 | Plus |
| CG9003-PC | 426 | CG9003-PC | 85..395 | 384..660 | 306 | 27.3 | Plus |
| Ppa-PC | 538 | CG9952-PC | 235..434 | 482..671 | 230 | 31.5 | Plus |
| Ppa-PA | 538 | CG9952-PA | 235..434 | 482..671 | 230 | 31.5 | Plus |
| Ppa-PB | 562 | CG9952-PB | 235..434 | 482..671 | 230 | 31.5 | Plus |
