BO30109.complete Sequence
1069 bp assembled on 2011-09-12
GenBank Submission: KX799682
> BO30109.complete
GAAGTTATCAGTCGACATGCCGCCCGTGCAAGTCCAGGCAGCGAACATGT
CGCTGGGTGCCATGCATTGTACGCGATGTGCCGACGGCTTCGAGCCGACT
GAGAAGATTGTTAACTCCAATGGAGAACTCTGGCACACCCAGTGCTTCGT
ATGTGCCCAGTGCTTCCGACCCTTCCAGGATGGGATATTCTACGAGTTCG
AGGGCCGTAAGTACTGTGAACGCGACTTTCACGTGCTCTTCGCTCCCTGC
TGCAACAAGTGCGGCGAGTTCGTCATCGGACGGGTCATCAAGGCCATGTC
AGCTAGCTGGCATCCACAGTGCTTCCGCTGCCAATTGTGCGCCAAGGAGC
TGGCTGATTGCGGATTCATCAAGAACCAGAACCGCGCCTTGTGTCACGAG
TGCAATGCCAAGGTGAAGGCGGAGATTACCGGCCGCTATGTATGCCAAAA
ATGCCACGGCCTCATCGACGAGGAGCCTTTGCGATTCCGGGGCGAAGTGT
ACCACGGCTATCACTTCAGTTGCACGGCCTGCGGCACAGAGTTGGATTCC
ACTGCTCGGGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAACGATATGAA
CGAACTGTATTGTCTGCGTTGTCACGATAAAATGGGCATTCCCATATGTG
GTGCCTGTCGTCGTCCGATTGAGGAGAGGGTGGTAACGGCGCTCGGAAAG
CACTGGCATGTGGAACATTTCGTGTGCGCCAAGTGCGAGAAACCCTTCTT
GGGTCACCGACACTACGAGAAGCGGGGATTGGCCTACTGCGAGACGCACT
ATCATCAGCTCTTTGGCAACCTGTGCTTCGTCTGCAACCAGGTTATTGGA
GGCGATGTTTTCACTGCCTTGAACAAGGCCTGGTGTGTGCACCACTTTGC
GTGCTCCGTGTGCGACACGAAGATGACACAAAAATCGAAATTCTACGAGT
ACGACGAGAAGCCGGTGTGCAAAAAGTGCTATGACCGATTTCCAAACGAA
CTCAGACGACGTCTGCGCACCGCCCACGAGATGACAATGAAAAAGAACAC
CGCAAGCTTTCTAGACCAT
BO30109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RB | 1038 | CG7954-PB | 1..1035 | 17..1051 | 5175 | 100 | Plus |
| stck-RC | 1047 | CG7954-PC | 24..1044 | 31..1051 | 5105 | 100 | Plus |
| stck-RD | 1008 | CG7954-PD | 1..1005 | 47..1051 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-RD | 1500 | CG7954-RD | 225..1259 | 17..1051 | 5175 | 100 | Plus |
| stck-RB | 1388 | CG7954-RB | 113..1147 | 17..1051 | 5175 | 100 | Plus |
| stck-RC | 1335 | CG7954-RC | 78..1098 | 31..1051 | 5105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8358649..8358954 | 151..456 | 1530 | 100 | Plus |
| 3R | 32079331 | 3R | 8359206..8359465 | 598..857 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 8359529..8359723 | 857..1051 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 8359009..8359150 | 457..598 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 8358471..8358590 | 31..150 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:08:10 has no hits.
BO30109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 16:33:52 Download gff for
BO30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 109..1143 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:22 Download gff for
BO30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 113..1147 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:53 Download gff for
BO30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stck-RB | 113..1147 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:53 Download gff for
BO30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8358471..8358590 | 31..150 | 100 | -> | Plus |
| 3R | 8358649..8358954 | 151..456 | 100 | -> | Plus |
| 3R | 8359009..8359150 | 457..598 | 100 | -> | Plus |
| 3R | 8359207..8359465 | 599..857 | 100 | -> | Plus |
| 3R | 8359530..8359723 | 858..1053 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:22 Download gff for
BO30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4184193..4184312 | 31..150 | 100 | -> | Plus |
| arm_3R | 4184371..4184676 | 151..456 | 100 | -> | Plus |
| arm_3R | 4184731..4184872 | 457..598 | 100 | -> | Plus |
| arm_3R | 4184929..4185187 | 599..857 | 100 | -> | Plus |
| arm_3R | 4185252..4185445 | 858..1053 | 98 | | Plus |
BO30109.pep Sequence
Translation from 16 to 1069
> BO30109.pep
MPPVQVQAANMSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCF
RPFQDGIFYEFEGRKYCERDFHVLFAPCCNKCGEFVIGRVIKAMSASWHP
QCFRCQLCAKELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCHGLI
DEEPLRFRGEVYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCL
RCHDKMGIPICGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHY
EKRGLAYCETHYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACSVCD
TKMTQKSKFYEYDEKPVCKKCYDRFPNELRRRLRTAHEMTMKKNTASFLD
H
BO30109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stck-PB | 345 | CG7954-PB | 1..345 | 1..345 | 1971 | 100 | Plus |
| stck-PC | 348 | CG7954-PC | 9..348 | 6..345 | 1943 | 100 | Plus |
| stck-PD | 335 | CG7954-PD | 1..335 | 11..345 | 1920 | 100 | Plus |
| stck-PA | 335 | CG7954-PA | 1..335 | 11..345 | 1920 | 100 | Plus |
| Pax-PB | 556 | CG31794-PB | 322..553 | 78..324 | 400 | 32.7 | Plus |
