BO30110.complete Sequence
967 bp assembled on 2011-09-12
GenBank Submission: KX797984
> BO30110.complete
GAAGTTATCAGTCGACATGGCCGATAAAAAAATTGGTGAATACTATGCAC
CACCTGTGAAAATGGGCAAATGGGAGGGTTTCAAAAAATTCCTATGGAAC
AGTGAAACTAGCCAATGCCTTGGACGCACCGGATCCAGTTGGGCGAAAAT
TCTCCTATTTTACATAATTTTTTATGCGGCGTTAACTGGTTTTTTTGCTG
CAATTTTCACTGTATTTTATCAAACTTTGGACAATGAAAAGCCAAAATGG
ATGCTTGACAATGGTTTGATAGGGTCCAACCCAGGTCTAGGCTTTCGACC
AATGCCACCGGAAGCGAATGTTGAGAGCACATTAGTTTGGTACGAGTCAT
CAAAGAAGGATAACTATAAGTACTGGGTGGACGAGACTTCACGTTTTCTG
AAATCGTACCAAGATCTTGAGAAGCAAAATCAAGTGAACTGTAGCTTTGA
ACATCCACCACAAGACGACAAGGTCTGCGGCATTGACTTCTCCAGCTTCT
CGCCATGTACAGCTGACAACAACTTTGGCTACCACGTTGCCCGGCCATGT
ATATTCCTTAAGTTGAATAAGATTTACAATTGGATACCAGAAATTTACAA
CGATTCTAAGACTTTGCCAGATCATATGCCAGAGGAACTAAAACAGCACA
TCAAGGAAAAGCAAAGTCTTAGGCCCAATGAAACAAATGTAGTTTGGGTC
TCGTGCGAGGGAGAAAATCCCGCTGATGTAGAGAACATAAAAGCACGCGA
CTACTATCCCCGAATGGGATTTCCTCGTTACTATTTTCCGTTTAAAAACA
TTCAGGGATATATACCGCCCATTGTTGCTGTTCAATTTACCGTTGAAACC
GGCGTTTTGATCAACATTGAATGTAAAGCTTGGGCCCGCAACATTAATCA
CGACCGTTCAGACAGAAGAGGATCCGTTCACTTCGAGTTGATGGTTGATG
CAAGCTTTCTAGACCAT
BO30110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv3-RD | 936 | CG8663-PD | 1..933 | 17..949 | 4650 | 99.9 | Plus |
nrv3-RC | 936 | CG8663-PC | 1..933 | 17..949 | 4650 | 99.9 | Plus |
nrv3-RA | 936 | CG8663-PA | 1..933 | 17..949 | 4650 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv3-RD | 4514 | CG8663-RD | 415..1347 | 17..949 | 4650 | 99.9 | Plus |
nrv3-RC | 1675 | CG8663-RC | 548..1480 | 17..949 | 4650 | 99.9 | Plus |
nrv3-RA | 1519 | CG8663-RA | 392..1324 | 17..949 | 4650 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21388503..21388669 | 405..571 | 835 | 100 | Plus |
2L | 23513712 | 2L | 21388914..21389079 | 683..848 | 815 | 99.4 | Plus |
2L | 23513712 | 2L | 21384454..21384597 | 143..286 | 720 | 100 | Plus |
2L | 23513712 | 2L | 21382204..21382330 | 17..143 | 635 | 100 | Plus |
2L | 23513712 | 2L | 21385275..21385397 | 282..404 | 615 | 100 | Plus |
2L | 23513712 | 2L | 21388730..21388842 | 570..682 | 565 | 100 | Plus |
2L | 23513712 | 2L | 21390052..21390152 | 849..949 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:12:55 has no hits.
BO30110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:41 Download gff for
BO30110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv3-RD | 741..1673 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:55 Download gff for
BO30110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv3-RC | 548..1480 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:55 Download gff for
BO30110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv3-RA | 392..1324 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:55 Download gff for
BO30110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21390052..21390152 | 849..951 | 98 | | Plus |
2L | 21382204..21382330 | 17..143 | 100 | -> | Plus |
2L | 21384455..21384595 | 144..284 | 100 | -> | Plus |
2L | 21385278..21385397 | 285..404 | 100 | -> | Plus |
2L | 21388503..21388669 | 405..571 | 100 | -> | Plus |
2L | 21388732..21388842 | 572..682 | 100 | -> | Plus |
2L | 21388914..21389079 | 683..848 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:55 Download gff for
BO30110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21390052..21390152 | 849..951 | 98 | | Plus |
arm_2L | 21382204..21382330 | 17..143 | 100 | -> | Plus |
arm_2L | 21384455..21384595 | 144..284 | 100 | -> | Plus |
arm_2L | 21385278..21385397 | 285..404 | 100 | -> | Plus |
arm_2L | 21388503..21388669 | 405..571 | 100 | -> | Plus |
arm_2L | 21388732..21388842 | 572..682 | 100 | -> | Plus |
arm_2L | 21388914..21389079 | 683..848 | 99 | -> | Plus |
BO30110.pep Sequence
Translation from 16 to 967
> BO30110.pep
MADKKIGEYYAPPVKMGKWEGFKKFLWNSETSQCLGRTGSSWAKILLFYI
IFYAALTGFFAAIFTVFYQTLDNEKPKWMLDNGLIGSNPGLGFRPMPPEA
NVESTLVWYESSKKDNYKYWVDETSRFLKSYQDLEKQNQVNCSFEHPPQD
DKVCGIDFSSFSPCTADNNFGYHVARPCIFLKLNKIYNWIPEIYNDSKTL
PDHMPEELKQHIKEKQSLRPNETNVVWVSCEGENPADVENIKARDYYPRM
GFPRYYFPFKNIQGYIPPIVAVQFTVETGVLINIECKAWARNINHDRSDR
RGSVHFELMVDASFLDH
BO30110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv3-PD | 311 | CG8663-PD | 1..311 | 1..311 | 1716 | 100 | Plus |
nrv3-PC | 311 | CG8663-PC | 1..311 | 1..311 | 1716 | 100 | Plus |
nrv3-PA | 311 | CG8663-PA | 1..311 | 1..311 | 1716 | 100 | Plus |
nrv3-PE | 313 | CG8663-PE | 1..313 | 1..311 | 1700 | 99 | Plus |
nrv2-PG | 323 | CG9261-PG | 14..323 | 8..311 | 884 | 50.3 | Plus |