BO30113.complete Sequence
886 bp assembled on 2011-09-12
GenBank Submission: KX796923
> BO30113.complete
GAAGTTATCAGTCGACATGGACGCCATCAAGAAGAAGATGCAAGCGATGA
AGCTTGAGAAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAA
GCCAAGGATGCCAACTCCCGCGCCGACAAACTGAACGAGGAGGTGCGCGA
TCTGGAGAAGAAGTTCGTCCAGGTGGAGATCGATCTGGTTACCGCCAAGG
AGCAGCTGGAGAAGGCCAACACCGAGCTGGAGGAGAAGGAGAAACTCCTG
ACCGCCACCGAGTCCGAGGTGGCCACCCAGAACCGCAAGGTGCAACAGAT
TGAGGAGGATCTGGAGAAGTCCGAGGAGCGCTCGACCACCGCCCAACAGA
AGCTGCTGGAGGCCACCCAGTCGGCCGATGAGAACAACCGCATGTGCAAG
GTGCTGGAGAACCGTTCCCAGCAGGATGAGGAGCGCATGGACCAGCTGAC
CAACCAGTTGAAGGAGGCCCGCATGCTGGCTGAGGATGCCGATACCAAGT
CCGACGAGGTCTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAGGTG
GCTGAGGATCGTGTCCGCTCCGGCGAGTCCAAGATCATGGAGCTGGAGGA
GGAGCTGAAGGTTGTCGGCAACTCCCTGAAGTCCCTGGAGGTGTCCGAGG
AGAAGGCCAACCAGCGCGTGGAGGAGTTCAAGCGCGAGATGAAGACCCTG
TCCATCAAGTTGAAGGAGGCCGAGCAGCGCGCCGAGCACGCCGAGAAGCA
AGTGAAGCGCCTGCAGAAGGAGGTCGACAGGCTAGAGGACGAGTTGGGCA
TCAACAAGGACAGGTACAAGTCCCTGGCCGACGAGATGGACTCCACATTC
GCCGAATTGGCTGGCTACGCAAGCTTTCTAGACCAT
BO30113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm2-RG | 855 | CG4843-PG | 1..852 | 17..868 | 4260 | 100 | Plus |
| Tm2-RF | 855 | CG4843-PF | 1..852 | 17..868 | 4260 | 100 | Plus |
| Tm2-RE | 855 | CG4843-PE | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm2-RG | 1145 | CG4843-RG | 77..929 | 16..868 | 4265 | 100 | Plus |
| Tm2-RF | 1200 | CG4843-RF | 132..984 | 16..868 | 4265 | 100 | Plus |
| Tm2-RE | 1892 | CG4843-RE | 450..1302 | 16..868 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15312452..15313048 | 16..612 | 2985 | 100 | Plus |
| 3R | 32079331 | 3R | 15313107..15313286 | 609..788 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 15314527..15314607 | 788..868 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:13:22 has no hits.
BO30113.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:42 Download gff for
BO30113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RB | 158..1009 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:11 Download gff for
BO30113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RB | 214..1065 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:04 Download gff for
BO30113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RE | 451..1302 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:04 Download gff for
BO30113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15312453..15313046 | 17..610 | 100 | -> | Plus |
| 3R | 15313109..15313286 | 611..788 | 100 | -> | Plus |
| 3R | 15314528..15314607 | 789..870 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:11 Download gff for
BO30113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11138175..11138768 | 17..610 | 100 | -> | Plus |
| arm_3R | 11138831..11139008 | 611..788 | 100 | -> | Plus |
| arm_3R | 11140250..11140329 | 789..870 | 97 | | Plus |
BO30113.pep Sequence
Translation from 16 to 886
> BO30113.pep
MDAIKKKMQAMKLEKDNAIDKADTCENQAKDANSRADKLNEEVRDLEKKF
VQVEIDLVTAKEQLEKANTELEEKEKLLTATESEVATQNRKVQQIEEDLE
KSEERSTTAQQKLLEATQSADENNRMCKVLENRSQQDEERMDQLTNQLKE
ARMLAEDADTKSDEVSRKLAFVEDELEVAEDRVRSGESKIMELEEELKVV
GNSLKSLEVSEEKANQRVEEFKREMKTLSIKLKEAEQRAEHAEKQVKRLQ
KEVDRLEDELGINKDRYKSLADEMDSTFAELAGYASFLDH
BO30113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm2-PG | 284 | CG4843-PG | 1..284 | 1..284 | 1384 | 100 | Plus |
| Tm2-PF | 284 | CG4843-PF | 1..284 | 1..284 | 1384 | 100 | Plus |
| Tm2-PE | 284 | CG4843-PE | 1..284 | 1..284 | 1384 | 100 | Plus |
| Tm2-PB | 284 | CG4843-PB | 1..284 | 1..284 | 1384 | 100 | Plus |
| Tm2-PA | 284 | CG4843-PA | 1..284 | 1..284 | 1384 | 100 | Plus |
