BO30124.complete Sequence
2536 bp assembled on 2011-10-14
GenBank Submission: KX798199
> BO30124.complete
GAAGTTATCAGTCGACATGGCTGCAAAGGAGACGATGATTGTGTTTGTCT
ACGACACAGAGTGTCTCACAGACGAGGCGGATGATCCCATATCGGCGGTG
CTCTACTTCCATCCAAGCTGGGTGTCCGACTCCCAGAAGGTGGCTCTGTG
TGGTCAGCTTATGGGCACGTCGTATTTCCTCAAGGATTGCTTCTTTAATC
CCCGCATCCTGGCGCTGCAGAATGGAAAATTTGTGCTGAAGGAATTCGGT
CGTTTTATTCTGGCAATTGGCACTGATCGAAATATTGGAGATCAACTGTT
GGAACATCGTGCTGATCTGCTGAGTTCCCTGCTCAAGTTTTTCCACCGTG
ACGTCCAGACATTGTATGCCCAGTATGCTGCACCGCCCGCCCTGAACCGC
CGGAATCTCAGCGAGAAACTGTACCACATCTTTGAAACATATCTGCCGAT
GCTGCAGCGCAACGGAAATACATTTCAAAATGTGCCGAGGCTGCGAATGC
CAAAGACGGCCAGTCATATATTCCTGGAGGCTATACAAACGTTGCAAAGT
TGCCAGCAGACAAAGGGAATACTTGGCGGAGCGATTCTGTACCACAACAA
GGTGGTTGCCTCGCAACTGAGCGATATGGTGACCAAGCATCTTGTACTCA
CCGATCCTCTGCACATCCGCACTGCGGCCGAGCAAGTGACCAACCATCCT
GAGTTCCACATACCCAACGGCGTTCAGATGCTGGTGGTTTATTTGGAGCA
TATGCAGTACCGCCAGTTAGCTGGCGAGGCACAGCGCGCCCAGAACCTGC
AGATGAACACAGCTCAGCTCACCCAAAATGGTATGCCGTTTCAGTATGCC
AAGCGTAAGATAAAGCGGGACAAGTCGCTCATTTTTACCCATATACCCGA
GGAGGAGCACGCCCCGGAGCAGCAGGGAGCAGTTGAACAGCTACCACCAG
CCAGGCCCAAATCTATGCGACCCACCCACCTGCCGTTGCGTATAAAAAGC
ATGCAGAGCAAAGAGCTACCGGAGTCTGGCATTGCATCAATAAATTTCGA
CGAAACCGATTCCTATCCGCAGTTCATTGGACGAACCAGCGTTTGCAATA
CTCCAATGACCGAGAACAAGGTACTGCCGGTGGCCAATGTTATGTCCATT
TGCGCAAATCCCGAAGATGAGGGCAAAGAGGAGGATATTCACAATTCCAA
TGGCAAGACACATTCGCGTCGAAATTCTCTAAAAGTGGATGTGGAGAAAT
TCTTTCAAAACTTCATTAGCAATCCAAACAAACAGCTCACACGACGCAAA
TCATCTGCAGACCTGCAGGATGCACTTCGCGCCATCTCCAAGAAACTGAA
TAATTTTACGCATGGCCTCAAAACCGATGTGAATCGAAATGGAAGCGGTA
ATGGTGATGTCTCTTCGGATTCGCCAGATTTCATAGAGGACGATGATAAG
ATTACTTCGCGGACCATCAGCGATCCCACCTATCCGGTATTCAACACTAA
CGGCCAGCAGATCTCGCGCAGTTTGTTTCAGCAATTTCTGGATCAGTATC
GTAAATTGTGGGGTGTTGCTAGTGAGCAGGCGCACGAGGATGCCGAGCTA
GCCGCTCTGGTAGCCGAGTTCCAGGAGTTCAACGCCGAGATCCAAAAGCT
CGACGAGCACATGAGACAGCAAGCAGCGGAAGCATCGTCTGCCGATAGGA
ATCTCAACGTTTCCGCAGCCAAAACTCCGCTGGACAAGCGATCCATGACG
CTGCCATTGAAATCAGCAGGAGAATCTACTTTCGGAGAGCGTGCGTCCGG
ACGCAGTGGAGCTGGTGGAGTACCACTAACACCCCTGATGGCCAAACTAT
CTGTTCTGGCTCTAAGCGAAACAACGCCCATCGAGATACAAACTCCGCTG
ACAACCAGTAAGGTTTTCCCACGGCGAAGTTCACTGAAGTGCGAGGATGC
AGTGGATGCATTGGCTGCCTTGACCACAGCCCCTGCTCAACCTCCGGGTC
CAATTCAACCAGATGGCTTGCAAAGAACTGAACTCTATATATGCGGACAG
CAGAATATGACCTTATTATTGCTCATGGAGGAGGGTACTTGTCAACAACA
GCAGGTTGTGCAGAAGATGTTCGACATTTGTGTGGCCAAGTTCCCGCACA
TGGAATCTCAACTGAATCAAACCTTAAATGTAAATGTGGAGGGCGACAAT
CGCGACGGGAGCAACTATAGCTTCATGTGCGTGGACTCCAAGTGGGATGT
TCTGCAGCGGAATGGCCCTTGGAATCCCCTAGAGCTTAATATCCTCGAGA
GCATGCACTCGATACATTCCAGTGGTCATCATCTTACAGATTTGATCTTG
AGATCCAACGACTCCGTTTATTATGGCCATAAGAATGGAAGGACCGAGTT
CTTCTACAAGGAACCTACCCATCAGATCAATGGCATACCACCGCCCTCGG
ATCCGATTGGCAATATACAATCCCGCGCCAAGTCGCGACTGGAACGTGAT
CATTCCTACATGCTGTTCGCAAGCTTTCTAGACCAT
BO30124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS4-RB | 2505 | CG4966-PB | 1..2502 | 17..2518 | 12510 | 100 | Plus |
| HPS4-RA | 2577 | CG4966-PA | 84..2574 | 28..2518 | 12455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS4-RB | 3429 | CG4966-RB | 145..2646 | 17..2518 | 12510 | 100 | Plus |
| HPS4-RA | 3522 | CG4966-RA | 249..2739 | 28..2518 | 12455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17688007..17689525 | 601..2119 | 7595 | 100 | Plus |
| 2R | 25286936 | 2R | 17687555..17687798 | 262..505 | 1220 | 100 | Plus |
| 2R | 25286936 | 2R | 17687258..17687493 | 28..263 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 17689582..17689815 | 2119..2352 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 17689872..17690039 | 2351..2518 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 17687852..17687949 | 504..601 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:33:57 has no hits.
BO30124.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:27 Download gff for
BO30124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS4-RB | 122..2623 | 17..2520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:10 Download gff for
BO30124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS4-RB | 145..2646 | 17..2520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:11 Download gff for
BO30124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS4-RB | 145..2646 | 17..2520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:11 Download gff for
BO30124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17689583..17689815 | 2120..2352 | 100 | -> | Plus |
| 2R | 17689874..17690039 | 2353..2520 | 98 | | Plus |
| 2R | 17687258..17687492 | 28..262 | 100 | -> | Plus |
| 2R | 17687556..17687798 | 263..505 | 100 | -> | Plus |
| 2R | 17687854..17687948 | 506..600 | 100 | -> | Plus |
| 2R | 17688007..17689525 | 601..2119 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:10 Download gff for
BO30124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13574763..13574997 | 28..262 | 100 | -> | Plus |
| arm_2R | 13575061..13575303 | 263..505 | 100 | -> | Plus |
| arm_2R | 13575359..13575453 | 506..600 | 100 | -> | Plus |
| arm_2R | 13575512..13577030 | 601..2119 | 100 | -> | Plus |
| arm_2R | 13577088..13577320 | 2120..2352 | 100 | -> | Plus |
| arm_2R | 13577379..13577544 | 2353..2520 | 98 | | Plus |
BO30124.pep Sequence
Translation from 16 to 2536
> BO30124.pep
MAAKETMIVFVYDTECLTDEADDPISAVLYFHPSWVSDSQKVALCGQLMG
TSYFLKDCFFNPRILALQNGKFVLKEFGRFILAIGTDRNIGDQLLEHRAD
LLSSLLKFFHRDVQTLYAQYAAPPALNRRNLSEKLYHIFETYLPMLQRNG
NTFQNVPRLRMPKTASHIFLEAIQTLQSCQQTKGILGGAILYHNKVVASQ
LSDMVTKHLVLTDPLHIRTAAEQVTNHPEFHIPNGVQMLVVYLEHMQYRQ
LAGEAQRAQNLQMNTAQLTQNGMPFQYAKRKIKRDKSLIFTHIPEEEHAP
EQQGAVEQLPPARPKSMRPTHLPLRIKSMQSKELPESGIASINFDETDSY
PQFIGRTSVCNTPMTENKVLPVANVMSICANPEDEGKEEDIHNSNGKTHS
RRNSLKVDVEKFFQNFISNPNKQLTRRKSSADLQDALRAISKKLNNFTHG
LKTDVNRNGSGNGDVSSDSPDFIEDDDKITSRTISDPTYPVFNTNGQQIS
RSLFQQFLDQYRKLWGVASEQAHEDAELAALVAEFQEFNAEIQKLDEHMR
QQAAEASSADRNLNVSAAKTPLDKRSMTLPLKSAGESTFGERASGRSGAG
GVPLTPLMAKLSVLALSETTPIEIQTPLTTSKVFPRRSSLKCEDAVDALA
ALTTAPAQPPGPIQPDGLQRTELYICGQQNMTLLLLMEEGTCQQQQVVQK
MFDICVAKFPHMESQLNQTLNVNVEGDNRDGSNYSFMCVDSKWDVLQRNG
PWNPLELNILESMHSIHSSGHHLTDLILRSNDSVYYGHKNGRTEFFYKEP
THQINGIPPPSDPIGNIQSRAKSRLERDHSYMLFASFLDH
BO30124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS4-PB | 834 | CG4966-PB | 1..834 | 1..834 | 4339 | 100 | Plus |
| HPS4-PA | 858 | CG4966-PA | 25..858 | 1..834 | 4324 | 99.5 | Plus |
