BO30125.complete Sequence
2728 bp assembled on 2011-10-14
GenBank Submission: KX795866
> BO30125.complete
GAAGTTATCAGTCGACATGACCGAAGACGAAATTCTCTTTGACGACGTCT
ACGAGCTGTGCGAGGTCATTGGCAAAGGACCTTTCTCCATCGTAAGGCGA
TGCATACACAGGGAGTCCAATCAGCAGTTTGCCGTCAAAATCGTTGATGT
GGCCAAGTTCACAGCGAGTCCTGGACTGAGCACAGCGGATCTGAAGCGCG
AGGCCACAATATGTCACATGTTAAAGCATCCGCACATTGTAGAGCTGCTG
GAGACGTACAGTTCCGAGGGAATGCTCTACATGGTCTTCGAGTTCATGGA
GGGCTCCGACTTGTGCTTCGAGGTTGTGCGGCGTGCTGTTGCCGGTTTTG
TCTACAGCGAGGCGGTTGCTTGTCACTATATGCGACAAATCCTGGAGGCA
CTGCGCTATTGTCACGAGAACGACATCCTGCACAGGGATGTTCGTCCCGC
CTGCGCTCTCCTCGCCACCGTCGACAACTCGGCGCCGGTGAAACTTGGCG
GCTTCGGATCGGCCATTCAGTTGCCCGGCACCCGGGAAACCATAGAAACA
CACGGACGGGTAGGATGTCCGCATTATATGGCGCCAGAGGTGGTGACCAG
GCGGCTTTACGGCAAAGGCTGCGATGTGTGGGGTGCCGGAGTGATGCTGC
ACGTCCTGCTCTCGGGCAGATTGCCCTTCCTGGGATCCGGAGTGAGGTTG
CAGCAGTCAGTAGCTCGCGGTCGGTTATCGTTTGAAGCACCGGAGTGGAA
ATCAATCTCGGCGAACGCCAAGGACTTAGTCATGAAAATGCTGGCCGCCA
ATCCACATCACAGACTCTCCATAACCGAGGTGCTGGATCATCCATGGATA
CGGGATCGGGACAAACTACAGCGCACTCACCTAGCGGACACGGTGGAGGA
ATTGAAACGCTACAATGCCCGGCGCAAGCTAAAGGGTGCTGTTCAGGCCA
TCGCAGGAGGCACCAACATGGATCCACTATACGCCACCGATGCGGACATG
CCCATAACCGGCGCCACGGACGAATGGGCCGACGAGGAGGCGGGCATTGA
GGCAGTGCAGCGCATCTTGGACTGTCTGGATGACATATATTCGCTGCAGG
ACGCACACGTTGACGCCGATGTGCTGCGGGATATGCTGCGCGACAACAGG
CTGCACCAGTTTCTGCAGCTGTTCGACAGGATCGCGGCGACAGTGGTGAC
CAGCAATGGTAGAGCACCGGCTGCCGAGGCCGTAGGCCGATGTCGCGATG
TCCTGGAGCAGCTCTCATCGACGTCCGGCGGCAACTCACTGGGCGGCAAG
TATGCCAAGGAGGAGCTGATGCGGCTACTGGCCGCCCCCCACATGCAGGC
TCTGCTCCATAGCCACGATGTGGTGGCCCGGGATGTCTACGGGGAGGAGG
CGCTGCGCGTCACCCCGCCCCCGATGGTGCCCTACCTCAATGGCGACGAG
CTGGACAACGTCGAGGGCGGCGAACTGCAGCATGTGACCCGGGTGCGACT
GGTGCAGTTTCAGAAGAACACGGACGAGCCCATGGGCATCACGCTGAAGA
TGACCGAGGACGGGCGGTGCATTGTGGCCAGGATTATGCACGGCGGGATG
ATTCATCGCCAGGCCACGCTGCACGTGGGCGACGAGATACGGGAGATCAA
CGGCCAGCCGGTGCAGCACCAGTCGGTTGGCCAATTGCAACGAATGCTGC
GCGAGGCACGCGGTTCTGTTACCTTCAAGATAGTTCCTTCGTACCGCAGC
GCTCCGCCCCCCTGCGAGATATTCGTGCGCGCCCAATTCGATTATAATCC
GCTGGATGATGAGCTTATACCCTGCGCCCAGGCGGGCATATCGTTCCAAG
TGGGCGATATACTGCAGATTATTAGCAAGGACGATCATCACTGGTGGCAG
GCGCGACTGGACACGGTGGGCGGATCGGCCGGACTGATACCGTCGCCGGA
GCTGCAGGAGTGGCGGATCGCCTGCCAGACGGTCGACAAGACCAAGCAGG
AGCAGGTTAACTGCTCCATCTTCGGGCGCAAGAAGAAGCAATGCCGGGAC
AAATATCTGGCCAAGCACAATGCCATCTTCGACACGCTCGATGTGGTCAC
GTACGAGGAGGTTGTCAAGGTGCCAGTTGGCGACCCGAACTTTCAGCGCA
AAACGTTGGTGCTCTTGGGTGCTCATGGGGTGGGCAGGCGGCACATTAAG
AACACCTTGATATCGAAGTACCCCGACAAGTACGCCTATCCCATACCACA
TACAACGAGACCTGCCAAACCCGAGGAGGAGAACGGACGCAGCTATTACT
TTGTCTCGCACGATGAAATGATGGCGGACATCGGTGCGAATGAGTACTTG
GAATACGGCACCCACGAGGATGCCATGTACGGCACCAAGTTGGACACCAT
CCGACGGATTCACACCGAGGGCAAGATGGCCATATTGGATGTGGAGCCGC
AGGCACTAAAAATACTCCGCACCGCCGAGTTCACGCCCTATGTCGTGTTT
ATAGCGGCGCCCTCACTGCAGAACATAGCAGATTACGACGGCAGCCTGGA
GCGACTGGCCAAGGAGTCGGAGATGCTGCGCCAGCTATACGGTCACTTCT
TCGATCTGACGATTGTGAACAACGATATTAGCGAGACGATTGCCACGCTG
GAGACGGCCATCGACCGGGTGCATACCACCCCGCAGTGGGTGCCCGTATC
CTGGCTGTACGCAAGCTTTCTAGACCAT
BO30125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CASK-RH | 2790 | CG6703-PH | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| CASK-RB | 2697 | CG6703-PB | 1..2694 | 17..2710 | 13470 | 100 | Plus |
| CASK-RF | 2751 | CG6703-PF | 1..1990 | 17..2006 | 9950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CASK-RH | 4128 | CG6703-RH | 511..3204 | 17..2710 | 13470 | 100 | Plus |
| CASK-RB | 4128 | CG6703-RB | 511..3204 | 17..2710 | 13470 | 100 | Plus |
| CASK-RF | 6544 | CG6703-RF | 511..2500 | 17..2006 | 9950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21818152..21818510 | 730..372 | 1795 | 100 | Minus |
| 3R | 32079331 | 3R | 21817100..21817450 | 1349..999 | 1755 | 100 | Minus |
| 3R | 32079331 | 3R | 21817818..21818086 | 998..730 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 21791960..21792151 | 1535..1344 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 21786686..21786862 | 2710..2534 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 21786930..21787106 | 2533..2357 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 21791729..21791894 | 1699..1534 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 21789449..21789592 | 2006..1863 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 21787786..21787911 | 2249..2124 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 21787979..21788103 | 2130..2006 | 610 | 99.2 | Minus |
| 3R | 32079331 | 3R | 21819654..21819766 | 188..76 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 21787172..21787280 | 2358..2250 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 21819018..21819124 | 294..188 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 21789662..21789762 | 1867..1767 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 21818872..21818949 | 372..295 | 390 | 100 | Minus |
| 3R | 32079331 | 3R | 21791531..21791604 | 1768..1695 | 355 | 98.6 | Minus |
| 3R | 32079331 | 3R | 21820647..21820705 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:37:16 has no hits.
BO30125.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:29 Download gff for
BO30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RB | 479..3172 | 17..2712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:26 Download gff for
BO30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RB | 511..3204 | 17..2712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:21 Download gff for
BO30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CASK-RB | 511..3204 | 17..2712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:21 Download gff for
BO30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21791961..21792146 | 1349..1534 | 100 | <- | Minus |
| 3R | 21786682..21786862 | 2534..2712 | 98 | <- | Minus |
| 3R | 21786930..21787105 | 2358..2533 | 100 | <- | Minus |
| 3R | 21787173..21787280 | 2250..2357 | 100 | <- | Minus |
| 3R | 21787786..21787908 | 2127..2249 | 100 | <- | Minus |
| 3R | 21787983..21788102 | 2007..2126 | 100 | <- | Minus |
| 3R | 21789449..21789587 | 1868..2006 | 100 | <- | Minus |
| 3R | 21789662..21789760 | 1769..1867 | 100 | <- | Minus |
| 3R | 21791531..21791599 | 1700..1768 | 100 | <- | Minus |
| 3R | 21791729..21791893 | 1535..1699 | 100 | <- | Minus |
| 3R | 21817101..21817450 | 999..1348 | 100 | <- | Minus |
| 3R | 21817818..21818085 | 731..998 | 100 | <- | Minus |
| 3R | 21818152..21818509 | 373..730 | 100 | <- | Minus |
| 3R | 21818872..21818949 | 295..372 | 100 | <- | Minus |
| 3R | 21819018..21819123 | 189..294 | 100 | <- | Minus |
| 3R | 21819654..21819766 | 76..188 | 100 | <- | Minus |
| 3R | 21820647..21820705 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:26 Download gff for
BO30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17645376..17645488 | 76..188 | 100 | <- | Minus |
| arm_3R | 17646369..17646427 | 17..75 | 100 | | Minus |
| arm_3R | 17615384..17615482 | 1769..1867 | 100 | <- | Minus |
| arm_3R | 17617253..17617321 | 1700..1768 | 100 | <- | Minus |
| arm_3R | 17612652..17612827 | 2358..2533 | 100 | <- | Minus |
| arm_3R | 17612895..17613002 | 2250..2357 | 100 | <- | Minus |
| arm_3R | 17613508..17613630 | 2127..2249 | 100 | <- | Minus |
| arm_3R | 17613705..17613824 | 2007..2126 | 100 | <- | Minus |
| arm_3R | 17615171..17615309 | 1868..2006 | 100 | <- | Minus |
| arm_3R | 17612404..17612584 | 2534..2712 | 98 | <- | Minus |
| arm_3R | 17617683..17617868 | 1349..1534 | 100 | <- | Minus |
| arm_3R | 17617451..17617615 | 1535..1699 | 100 | <- | Minus |
| arm_3R | 17644740..17644845 | 189..294 | 100 | <- | Minus |
| arm_3R | 17642823..17643172 | 999..1348 | 100 | <- | Minus |
| arm_3R | 17643540..17643807 | 731..998 | 100 | <- | Minus |
| arm_3R | 17643874..17644231 | 373..730 | 100 | <- | Minus |
| arm_3R | 17644594..17644671 | 295..372 | 100 | <- | Minus |
BO30125.pep Sequence
Translation from 16 to 2728
> BO30125.pep
MTEDEILFDDVYELCEVIGKGPFSIVRRCIHRESNQQFAVKIVDVAKFTA
SPGLSTADLKREATICHMLKHPHIVELLETYSSEGMLYMVFEFMEGSDLC
FEVVRRAVAGFVYSEAVACHYMRQILEALRYCHENDILHRDVRPACALLA
TVDNSAPVKLGGFGSAIQLPGTRETIETHGRVGCPHYMAPEVVTRRLYGK
GCDVWGAGVMLHVLLSGRLPFLGSGVRLQQSVARGRLSFEAPEWKSISAN
AKDLVMKMLAANPHHRLSITEVLDHPWIRDRDKLQRTHLADTVEELKRYN
ARRKLKGAVQAIAGGTNMDPLYATDADMPITGATDEWADEEAGIEAVQRI
LDCLDDIYSLQDAHVDADVLRDMLRDNRLHQFLQLFDRIAATVVTSNGRA
PAAEAVGRCRDVLEQLSSTSGGNSLGGKYAKEELMRLLAAPHMQALLHSH
DVVARDVYGEEALRVTPPPMVPYLNGDELDNVEGGELQHVTRVRLVQFQK
NTDEPMGITLKMTEDGRCIVARIMHGGMIHRQATLHVGDEIREINGQPVQ
HQSVGQLQRMLREARGSVTFKIVPSYRSAPPPCEIFVRAQFDYNPLDDEL
IPCAQAGISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPSPELQEWR
IACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVV
KVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPHTTRPA
KPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDTIRRIHT
EGKMAILDVEPQALKILRTAEFTPYVVFIAAPSLQNIADYDGSLERLAKE
SEMLRQLYGHFFDLTIVNNDISETIATLETAIDRVHTTPQWVPVSWLYAS
FLDH
BO30125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CASK-PH | 929 | CG6703-PH | 1..898 | 1..898 | 4710 | 100 | Plus |
| CASK-PB | 898 | CG6703-PB | 1..898 | 1..898 | 4710 | 100 | Plus |
| CASK-PF | 916 | CG6703-PF | 1..916 | 1..898 | 4681 | 98 | Plus |
| CASK-PD | 591 | CG6703-PD | 127..591 | 444..898 | 2385 | 97.8 | Plus |
| CASK-PA | 591 | CG6703-PA | 127..591 | 444..898 | 2385 | 97.8 | Plus |
