Clone BO30128 Report

Search the DGRC for BO30128

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:301
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptSh-RD
Protein status:BO30128.pep: Imported from assembly
Sequenced Size:1747

Clone Sequence Records

BO30128.complete Sequence

1747 bp assembled on 2011-10-14

GenBank Submission: KX793860

> BO30128.complete
GAAGTTATCAGTCGACATGGCACACATCACGACGACGCACGGCAGCTTAA
GCCAAGCGACAAGGTCTTTGCCCAAATTGAGCAGTCAAGACGAAGAAGGG
GGGGCTGGTCATGGCTTTGGTGGCGGACCGCAACACTTTGAACCCATTCC
TCACGATCATGATTTCTGCGAAAGAGTCGTTATAAATGTAAGCGGATTAA
GGTTTGAGACACAACTACGTACGTTAAATCAATTCCCGGACACGCTGCTT
GGGGATCCAGCTCGGAGATTACGGTACTTTGACCCGCTTAGAAATGAATA
TTTTTTTGACCGTAGTCGACCGAGCTTCGATGCGATTTTATACTATTATC
AGAGTGGTGGCCGACTACGGAGACCGGTCAATGTCCCTTTAGACGTATTT
AGTGAAGAAATAAAATTTTATGAATTAGGTGATCAAGCAATTAATAAATT
CAGAGAGGATGAAGGCTTTATTAAAGAGGAAGAAAGACCATTACCGGATA
ATGAGAAACAGAGAAAAGTCTGGCTGCTCTTCGAGTATCCAGAAAGTTCG
CAAGCCGCCAGAGTTGTAGCCATAATTAGTGTATTTGTTATATTGCTATC
AATTGTTATATTTTGTCTAGAAACATTACCCGAATTTAAGCATTACAAGG
TGTTCAATACAACAACAAATGGCACAAAAATCGAGGAAGACGAGGTGCCT
GACATCACAGATCCTTTCTTCCTTATAGAAACGTTATGTATTATTTGGTT
TACATTTGAACTAACTGTCAGGTTCCTCGCATGTCCGAACAAATTAAATT
TCTGCAGGGATGTCATGAATGTTATCGACATAATCGCCATCATTCCGTAC
TTTATAACACTAGCGACTGTCGTTGCCGAAGAGGAGGATACGTTAAATCT
TCCAAAAGCGCCAGTCAGTCCACAGGACAAGTCATCGAATCAGGCTATGT
CCTTGGCAATATTACGAGTGATACGATTAGTTCGAGTATTTCGAATATTT
AAGTTATCTAGGCATTCGAAGGGTTTACAAATATTAGGACGAACTCTGAA
AGCCTCAATGCGGGAATTAGGTTTACTTATATTTTTCTTATTTATAGGCG
TCGTACTCTTCTCATCGGCGGTTTATTTTGCGGAAGCTGGAAGCGAAAAT
TCCTTCTTCAAGTCCATACCCGATGCATTTTGGTGGGCGGTCGTTACCAT
GACCACCGTTGGATATGGTGACATGACGCCCGTCGGCTTCTGGGGCAAAA
TTGTCGGCTCTTTGTGCGTGATCGCTGGTGTGCTGACAATCGCACTGCCG
GTACCGGTTATCGTCAGTAATTTCAATTACTTCTATCACCGCGAAACGGA
TCAGGAGGAGATGCAGAGCCAAAATTTCAACCACGTTACAAGTTGTTCAT
ATTTACCTGGTGCACTAGGTCAACATTTGAAGAAATCCTCACTCTCCGAA
TCGTCGTCGGACATAATGGATTTGGATGATGGCATTGATGCAACCACGCC
AGGTCTGACTGATCACACGGGCCGCCACATGGTGCCGTTTCTCAGGACAC
AGCAGTCATTCGAGAAGCAGCAGCTCCAGCTTCAGCTGCAGCTGCAGCAG
CAGTCGCAGTCGCCGCACGGCCAACAGATGACGCAGCAGCAGCAGCTGGG
CCAGAACGGCCTAAGGAGCACAAATAGTTTACAGTTAAGGCATAATAACG
CGATGGCCGTCAGTATTGAGACCGACGTCGCAAGCTTTCTAGACCAT

BO30128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sh-RD 1716 CG12348-PD 1..1713 17..1729 8565 100 Plus
Sh-RS 1815 CG12348-PS 145..1812 62..1729 8340 100 Plus
Sh-RR 1851 CG12348-PR 182..1848 63..1729 8335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Sh-RD 2442 CG12348-RD 275..1987 17..1729 8565 100 Plus
Sh-RS 3836 CG12348-RS 1496..3163 62..1729 8340 100 Plus
Sh-RR 2843 CG12348-RR 722..2388 63..1729 8335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17930127..17930440 1729..1416 1570 100 Minus
X 23542271 X 17951412..17951613 652..451 1010 100 Minus
X 23542271 X 17930584..17930776 1420..1228 965 100 Minus
X 23542271 X 17949920..17950094 1098..924 875 100 Minus
X 23542271 X 17952986..17953156 358..188 855 100 Minus
X 23542271 X 17950610..17950768 926..768 795 100 Minus
X 23542271 X 17945218..17945355 1228..1091 675 99.3 Minus
X 23542271 X 17953221..17953348 189..62 640 100 Minus
X 23542271 X 17951190..17951315 773..648 630 100 Minus
X 23542271 X 17942780..17942971 1420..1229 540 85.4 Minus
X 23542271 X 17952677..17952774 453..356 490 100 Minus
X 23542271 X 17946600..17946730 1226..1096 310 82.4 Minus
X 23542271 X 18014262..18014310 65..17 245 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:39:36 has no hits.

BO30128.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:30 Download gff for BO30128.complete
Subject Subject Range Query Range Percent Splice Strand
Sh-RD 275..1987 17..1731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:27 Download gff for BO30128.complete
Subject Subject Range Query Range Percent Splice Strand
Sh-RD 275..1987 17..1731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:20 Download gff for BO30128.complete
Subject Subject Range Query Range Percent Splice Strand
Sh-RD 275..1987 17..1731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:20 Download gff for BO30128.complete
Subject Subject Range Query Range Percent Splice Strand
X 17953223..17953346 64..187 100 <- Minus
X 18014264..18014310 17..63 100   Minus
X 17951192..17951313 650..771 100 <- Minus
X 17951415..17951610 454..649 100 <- Minus
X 17952677..17952773 357..453 100 <- Minus
X 17930123..17930437 1419..1731 99 <- Minus
X 17930586..17930776 1228..1418 100 <- Minus
X 17945219..17945348 1098..1227 100 <- Minus
X 17949921..17950092 926..1097 100 <- Minus
X 17950611..17950764 772..925 100 <- Minus
X 17952988..17953156 188..356 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:27 Download gff for BO30128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17847021..17847189 188..356 100 <- Minus
arm_X 17847256..17847379 64..187 100 <- Minus
arm_X 17908297..17908343 17..63 100   Minus
arm_X 17824619..17824809 1228..1418 100 <- Minus
arm_X 17839252..17839381 1098..1227 100 <- Minus
arm_X 17843954..17844125 926..1097 100 <- Minus
arm_X 17844644..17844797 772..925 100 <- Minus
arm_X 17845225..17845346 650..771 100 <- Minus
arm_X 17845448..17845643 454..649 100 <- Minus
arm_X 17846710..17846806 357..453 100 <- Minus
arm_X 17824156..17824470 1419..1731 99 <- Minus

BO30128.pep Sequence

Translation from 16 to 1747

> BO30128.pep
MAHITTTHGSLSQATRSLPKLSSQDEEGGAGHGFGGGPQHFEPIPHDHDF
CERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRS
RPSFDAILYYYQSGGRLRRPVNVPLDVFSEEIKFYELGDQAINKFREDEG
FIKEEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFC
LETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELT
VRFLACPNKLNFCRDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPV
SPQDKSSNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRTLKASMRE
LGLLIFFLFIGVVLFSSAVYFAEAGSENSFFKSIPDAFWWAVVTMTTVGY
GDMTPVGFWGKIVGSLCVIAGVLTIALPVPVIVSNFNYFYHRETDQEEMQ
SQNFNHVTSCSYLPGALGQHLKKSSLSESSSDIMDLDDGIDATTPGLTDH
TGRHMVPFLRTQQSFEKQQLQLQLQLQQQSQSPHGQQMTQQQQLGQNGLR
STNSLQLRHNNAMAVSIETDVASFLDH

BO30128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sh-PD 571 CG12348-PD 1..571 1..571 2963 100 Plus
Sh-PS 604 CG12348-PS 49..604 16..571 2887 100 Plus
Sh-PR 616 CG12348-PR 62..616 17..571 2882 100 Plus
Sh-PQ 616 CG12348-PQ 62..616 17..571 2882 100 Plus
Sh-PB 616 CG12348-PB 62..616 17..571 2882 100 Plus