BO30131.complete Sequence
3007 bp assembled on 2011-10-14
GenBank Submission: KX798465
> BO30131.complete
GAAGTTATCAGTCGACATGCATTCGAGGCTAAAATTCTTGGCATATTTAC
ATTTTATATGCGCCAGCAGCATTTTCTGGCCGGAATTTAGTTCAGCCCAG
CAGCAGCAACAGACGGTATCGTTAACCGAGAAAATACCATTAGGTGCAAT
CTTCGAACAGGGAACGGATGATGTGCAATCAGCCTTTAAATATGCAATGC
TCAATCACAATCTGAATGTGAGCTCTCGACGCTTCGAATTGCAGGCGTAT
GTCGATGTCATCAATACAGCGGATGCATTCAAATTATCCCGCCTGATTTG
CAATCAATTCTCGCGCGGAGTCTACTCAATGCTGGGCGCCGTATCGCCGG
ACTCGTTTGACACATTGCACTCGTACTCGAATACGTTCCAAATGCCATTT
GTGACGCCCTGGTTTCCCGAGAAGGTGCTTGCGCCGTCGTCGGGTCTCCT
GGATTTCGCTATCAGCATGCGTCCGGATTATCATCAGGCGATTATCGATA
CCATCCAGTACTACGGCTGGCAGAGCATTATTTATCTCTACGACTCGCAC
GATGGCTTACTACGGCTGCAGCAAATCTATCAAGAACTGAAGCCCGGAAA
TGAAACGTTCCGTGTGCAAATGGTGAAACGCATCGCCAACGTAACGATGG
CCATTGAATTTTTGCACACGCTGGAGGATTTGGGTCGCTTTAGCAAAAAG
CGCATCGTGCTCGACTGCCCGGCGGAAATGGCCAAAGAGATCATCGTCCA
GCATGTGCGGGACATCAAGCTGGGCCGGCGCACCTATCATTACCTGCTCA
GCGGACTGGTCATGGACAACCACTGGCCCAGCGATGTGGTCGAGTTTGGG
GCCATCAACATCACCGGCTTTCGGATTGTCGACTCTAATCGGAGGGCGGT
GCGTGATTTCCACGACAGCCGGAAACGTTTGGAGCCGAGCGGCCAAAGCC
AAAGCCAGAACGCAGGGGGGCCCAACAGCTTGCCGGCCATTTCGGCCCAG
GCTGCACTGATGTACGATGCGGTTTTTGTGCTCGTCGAGGCCTTCAATCG
CATTTTGCGCAAGAAGCCGGATCAGTTCCGTTCCAATCATCTGCAGCGCC
GCAGCCACGGAGGCAGCTCCTCCTCATCCGCCACGGGCACCAATGAGTCC
AGTGCCCTCCTCGATTGCAACACCAGCAAGGGCTGGGTCACGCCATGGGA
GCAGGGCGAAAAAATATCAAGGGTGCTGAGAAAGGTGGAAATCGACGGTT
TGTCGGGCGAGATCCGTTTCGACGAGGACGGACGTCGCATCAACTACACG
CTGCATGTGGTGGAGATGTCCGTGAACAGCACCTTGCAGCAGGTGGCCGA
GTGGCGTGATGACGCCGGACTCCTTCCGCTCCACAGCCATAACTACGCGT
CGTCATCGCGTTCCGCGTCGGCCAGCACCGGAGATTACGACCGGAATCAC
ACGTACATCGTGAGTAGTCTGCTGGAGGAGCCGTATCTGTCGCTCAAGCA
GTACACCTACGGAGAATCATTGGTGGGCAACGATCGATTCGAGGGATACT
GCAAGGATTTGGCCGATATGCTAGCAGCTCAACTGGGAATTAAATATGAA
ATACGCCTGGTGCAAGATGGCAACTATGGTGCAGAGAATCAGTATGCTCC
TGGCGGTTGGGATGGCATGGTGGGTGAGCTGATTCGCAAGGAGGCGGATA
TAGCCATATCCGCAATGACTATTACAGCCGAAAGAGAACGGGTTATAGAC
TTTAGCAAACCCTTTATGACCCTGGGAATATCCATTATGATAAAGAAGCC
CGTGAAACAGACACCAGGAGTGTTTAGTTTTCTTAATCCCCTATCCCAGG
AAATTTGGATAAGCGTGATTCTCAGCTATGTGGGTGTTAGTTTTGTTCTG
TACTTTGTTACACGTTTCCCACCCTATGAGTGGCGGATTGTGAGGCGTCC
TCAAGCGGATTCCACTGCCCAGCAACCACCGGGAATTATTGGAGGTGCCA
CTTTGAGTGAACCACAAGCGCATGTGCCTCCAGTTCCACCTAATGAGTTC
ACTATGCTGAACTCCTTTTGGTATTCCTTGGCTGCTTTTATGCAGCAGGG
ATGCGATATTACACCTCCTTCGATTGCCGGAAGGATAGCAGCTGCCGTCT
GGTGGTTCTTCACTATCATATTAATATCCTCGTATACCGCCAATTTGGCC
GCTTTTCTCACAGTGGAGCGTATGGTGGCGCCCATCAAAACGCCCGAGGA
CTTGACCATGCAAACGGATGTGAACTATGGTACCCTGTTATACGGCTCCA
CTTGGGAATTCTTTAGGCGTTCACAAATCGGTCTGCACAATAAAATGTGG
GAGTATATGAATGCCAATCAACACCATTCGGTGCACACCTATGATGAGGG
TATTCGTAGGGTGAGGCAATCCAAGGGCAAGTATGCCCTACTGGTGGAGT
CACCCAAAAACGAGTATGTAAATGCTAGGCCTCCGTGCGACACAATGAAA
GTGGGACGCAATATCGATACGAAGGGATTTGGCGTGGCCACACCCATAGG
ATCGCCACTGAGAAAACGCTTAAACGAGGCCGTGCTAACGCTAAAGGAGA
ACGGTGAGCTGTTGCGGATTAGGAATAAATGGTGGTTCGACAAGACCGAG
TGCAATCTGGACCAGGAGACCTCCACACCGAACGAGCTCTCGCTAAGCAA
TGTGGCCGGGATCTACTACATCCTAATCGGAGGCCTGCTCCTGGCCGTGA
TTGTGGCCATCATGGAGTTCTTCTGCCGCAACAAAACCCCGCAGCTAAAG
TCGCCAGGATCCAATGGATCCGCTGGTGGAGTGCCCGGAATGCTGGCCTC
CTCAACATATCAAAGGGATTCCCTTTCCGATGCGATTATGCATTCGCAGG
CCAAGTTGGCGATGCAGGCGAGCAGCGAGTATGACGAGCGATTGGTGGGC
GTTGAGTTGGCCTCGAACGTGCGGTATCAGTACAGCATGGCAAGCTTTCT
AGACCAT
BO30131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIA-RA | 2976 | CG8442-PA | 1..2973 | 17..2989 | 14865 | 100 | Plus |
| GluRIB-RD | 3318 | CG43743-PD | 108..923 | 118..933 | 1365 | 77.8 | Plus |
| GluRIB-RC | 3288 | CG43743-PC | 108..923 | 118..933 | 1365 | 77.8 | Plus |
| GluRIB-RD | 3318 | CG43743-PD | 2220..2815 | 2059..2654 | 700 | 74.5 | Plus |
| GluRIB-RD | 3318 | CG43743-PD | 1570..1980 | 1526..1936 | 555 | 75.7 | Plus |
| GluRIB-RD | 3318 | CG43743-PD | 1239..1433 | 1177..1371 | 240 | 74.9 | Plus |
| GluRIB-RD | 3318 | CG43743-PD | 958..1049 | 989..1080 | 205 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIA-RA | 3810 | CG8442-RA | 539..3511 | 17..2989 | 14865 | 100 | Plus |
| GluRIB-RD | 5439 | CG43743-RD | 865..1680 | 118..933 | 1365 | 77.8 | Plus |
| GluRIB-RC | 7186 | CG43743-RC | 865..1680 | 118..933 | 1365 | 77.8 | Plus |
| GluRIB-RD | 5439 | CG43743-RD | 2977..3572 | 2059..2654 | 700 | 74.5 | Plus |
| GluRIB-RD | 5439 | CG43743-RD | 2327..2737 | 1526..1936 | 555 | 75.7 | Plus |
| GluRIB-RD | 5439 | CG43743-RD | 1996..2190 | 1177..1371 | 240 | 74.9 | Plus |
| GluRIB-RD | 5439 | CG43743-RD | 1715..1806 | 989..1080 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6633399..6633858 | 1858..2317 | 2300 | 100 | Plus |
| 3L | 28110227 | 3L | 6634265..6634660 | 2561..2956 | 1980 | 100 | Plus |
| 3L | 28110227 | 3L | 6632587..6632953 | 1233..1599 | 1820 | 99.7 | Plus |
| 3L | 28110227 | 3L | 6633073..6633340 | 1596..1863 | 1325 | 99.6 | Plus |
| 3L | 28110227 | 3L | 6631300..6631556 | 554..810 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 6633921..6634166 | 2317..2562 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 6632140..6632383 | 994..1237 | 1220 | 100 | Plus |
| 3L | 28110227 | 3L | 6631866..6632053 | 808..995 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 6626419..6626573 | 142..296 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 6628874..6629006 | 423..555 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 6624570..6624699 | 17..146 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 6626931..6627060 | 297..426 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9258098..9258228 | 297..427 | 370 | 85.5 | Plus |
| 3L | 28110227 | 3L | 9284007..9284223 | 2317..2533 | 365 | 77.9 | Plus |
| 3L | 28110227 | 3L | 9257402..9257556 | 142..296 | 340 | 81.3 | Plus |
| 3L | 28110227 | 3L | 9278580..9278749 | 1689..1858 | 310 | 78.8 | Plus |
| 3L | 28110227 | 3L | 9282871..9283125 | 2059..2313 | 300 | 74.5 | Plus |
| 3L | 28110227 | 3L | 9258823..9258955 | 423..555 | 260 | 79.7 | Plus |
| 3L | 28110227 | 3L | 9266329..9266519 | 569..759 | 190 | 73.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:42:17 has no hits.
BO30131.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:32 Download gff for
BO30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glu-RI-RA | 537..3509 | 17..2991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:35 Download gff for
BO30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIA-RA | 539..3511 | 17..2991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:31 Download gff for
BO30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIA-RA | 539..3511 | 17..2991 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:31 Download gff for
BO30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6633073..6633335 | 1596..1858 | 100 | -> | Plus |
| 3L | 6632589..6632949 | 1235..1595 | 100 | -> | Plus |
| 3L | 6624570..6624696 | 17..143 | 100 | -> | Plus |
| 3L | 6626421..6626573 | 144..296 | 100 | -> | Plus |
| 3L | 6626931..6627058 | 297..424 | 100 | -> | Plus |
| 3L | 6628876..6629005 | 425..554 | 100 | -> | Plus |
| 3L | 6633400..6633858 | 1859..2317 | 100 | -> | Plus |
| 3L | 6633922..6634166 | 2318..2562 | 100 | -> | Plus |
| 3L | 6634267..6634660 | 2563..2956 | 100 | -> | Plus |
| 3L | 6634728..6634760 | 2957..2991 | 94 | | Plus |
| 3L | 6631301..6631554 | 555..808 | 100 | -> | Plus |
| 3L | 6631867..6632052 | 809..994 | 100 | -> | Plus |
| 3L | 6632141..6632380 | 995..1234 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:35 Download gff for
BO30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6624401..6624654 | 555..808 | 100 | -> | Plus |
| arm_3L | 6626173..6626435 | 1596..1858 | 100 | -> | Plus |
| arm_3L | 6624967..6625152 | 809..994 | 100 | -> | Plus |
| arm_3L | 6625241..6625480 | 995..1234 | 100 | -> | Plus |
| arm_3L | 6625689..6626049 | 1235..1595 | 100 | -> | Plus |
| arm_3L | 6617670..6617796 | 17..143 | 100 | -> | Plus |
| arm_3L | 6619521..6619673 | 144..296 | 100 | -> | Plus |
| arm_3L | 6620031..6620158 | 297..424 | 100 | -> | Plus |
| arm_3L | 6621976..6622105 | 425..554 | 100 | -> | Plus |
| arm_3L | 6626500..6626958 | 1859..2317 | 100 | -> | Plus |
| arm_3L | 6627022..6627266 | 2318..2562 | 100 | -> | Plus |
| arm_3L | 6627367..6627760 | 2563..2956 | 100 | -> | Plus |
| arm_3L | 6627828..6627860 | 2957..2991 | 94 | | Plus |
BO30131.pep Sequence
Translation from 16 to 3007
> BO30131.pep
MHSRLKFLAYLHFICASSIFWPEFSSAQQQQQTVSLTEKIPLGAIFEQGT
DDVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADAFKLSRLICNQFSR
GVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLAPSSGLLDFAIS
MRPDYHQAIIDTIQYYGWQSIIYLYDSHDGLLRLQQIYQELKPGNETFRV
QMVKRIANVTMAIEFLHTLEDLGRFSKKRIVLDCPAEMAKEIIVQHVRDI
KLGRRTYHYLLSGLVMDNHWPSDVVEFGAINITGFRIVDSNRRAVRDFHD
SRKRLEPSGQSQSQNAGGPNSLPAISAQAALMYDAVFVLVEAFNRILRKK
PDQFRSNHLQRRSHGGSSSSSATGTNESSALLDCNTSKGWVTPWEQGEKI
SRVLRKVEIDGLSGEIRFDEDGRRINYTLHVVEMSVNSTLQQVAEWRDDA
GLLPLHSHNYASSSRSASASTGDYDRNHTYIVSSLLEEPYLSLKQYTYGE
SLVGNDRFEGYCKDLADMLAAQLGIKYEIRLVQDGNYGAENQYAPGGWDG
MVGELIRKEADIAISAMTITAERERVIDFSKPFMTLGISIMIKKPVKQTP
GVFSFLNPLSQEIWISVILSYVGVSFVLYFVTRFPPYEWRIVRRPQADST
AQQPPGIIGGATLSEPQAHVPPVPPNEFTMLNSFWYSLAAFMQQGCDITP
PSIAGRIAAAVWWFFTIILISSYTANLAAFLTVERMVAPIKTPEDLTMQT
DVNYGTLLYGSTWEFFRRSQIGLHNKMWEYMNANQHHSVHTYDEGIRRVR
QSKGKYALLVESPKNEYVNARPPCDTMKVGRNIDTKGFGVATPIGSPLRK
RLNEAVLTLKENGELLRIRNKWWFDKTECNLDQETSTPNELSLSNVAGIY
YILIGGLLLAVIVAIMEFFCRNKTPQLKSPGSNGSAGGVPGMLASSTYQR
DSLSDAIMHSQAKLAMQASSEYDERLVGVELASNVRYQYSMASFLDH
BO30131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIA-PA | 991 | CG8442-PA | 1..991 | 1..991 | 5159 | 100 | Plus |
| GluRIB-PD | 1105 | CG43743-PD | 37..1070 | 35..987 | 3460 | 65.8 | Plus |
| GluRIB-PC | 1095 | CG43743-PIB-RC | 37..1070 | 35..987 | 3460 | 65.8 | Plus |
| GluRIB-PB | 1182 | CG43743-PB | 37..1070 | 35..987 | 3460 | 65.8 | Plus |
| GluRIB-PA | 1095 | CG43743-PA | 37..1070 | 35..987 | 3460 | 65.8 | Plus |
