BO30136.complete Sequence
1807 bp assembled on 2011-10-14
GenBank Submission: KX794286
> BO30136.complete
GAAGTTATCAGTCGACATGTCGTCCCTTTTGAACGCTACCGTCCTGGCAA
CCGCTGCCACCGTGGTTCCCGACTCACAGTTCGTTTTCAACGCCACGGAT
TACGGCGTATTCGCCCTGGTGCTGAGCATCTCTGCCGCTATTGGAGTTTA
TTTCGGTTTCTTTGCCAAGGGCGAGGACACCACGGAGGAGTACCTGATGG
GCGGCAAGCGGATGAAAACGATTCCCATCGCCATTTCGCTGGTGGCCAGT
CAACTGTCGGCGATCTCCATAATGACCATTCCGGCGGAAATGTACGCCTA
CGGAATCAACTGGGTTTTCAACGTGGTTTGCATGGTGCTTGTGGTGCCGC
TTCTTAATTACTTGGTGATCCCGGTTTTCTACAACAATAATATCACAAAC
TGCTATGAGTACTTGGAGATGCGCTTTTGCCGGAAGGTGCGAGTGCTGCA
GACCTTCATCTTCATATTGACGATGTTTTTCATGCTCCCGATCTTTATCT
TCCTGCCTTCCCTGGCCTTTGCACAGGTGACCGGATTTAATGTGCACCTA
ATCAACACCGTTGTGTGCAGCATCTGCGTCTTCTACACCATGTTCGGAGG
TATCAAGGCTGTGGTGTGGACCGATGTTATCCAGGCAGCCATTATGGTTG
CATCCGTGGTCCTAGTGGGCGTTTTGGGCGCCCACCGAGTGGGAGGCTTC
TTTGAAGTGCTGCGCATTGCCGGGGAAGGTGGACGCCTGGATATCAACTA
CAACTTCGACCTGACCACGCGCTCTACCATATGGAACATTTTCACATCGG
CGACTATGATGTGGACGGGATACGTGGGTCTGAACCAGAGCTGCGTGCAG
CGAATCGTGTCCCTGCCTTCACTGGGTCACGCCAGAAGATCGCTGGTGCT
CTTTGGCTTCGGGTTTATCCTGATCATGTTCTTCAACTGCTTCACAGGCA
TTGTGATTTACTCCCGCTTCCACGACTGCGATCCCATCCAGTCTGGTCAT
GTCTCTAAGGTGGACAAGATGGTTCCGTACTTCGTGCAAGATACCGTAGG
TAACTTGTGGGGCATGCCAGGTGTATTTATTTCCTGCGTGTTCAGTGCTG
CCCTTAGCACGCTTTCCGCCAGCATCAATTCCCTGGGAGGAGTTGTCTAC
TTCGACTACATCAAGCCACACATTCGACACACGGAGCACCGGGCCAACGT
GATTATGAAACTGTTCGTTTTCTTTACCGGAATCTACTGCATCTTGGGTG
GGATGGTTATTGAGAACTTCAACTCCATTCTGCAAGTGATCTATTCTATT
GGAGGCATGAGCTTTGGCTCGACGTGTGGCGTTTTTATGCTGGGAATGCT
GGTTCCAAAATCCCATGGCAGGGCCGCTTTAGTTGGAGTTCTCGCTAGCA
TTGCCTGTATGGCCACCATTGTGATTTTGAGCTGGGGCCGCAATCACTAT
GACACTCTGCCCACGAGCACATCCGCTTGTCCAGCTTCCCTGAACGGAAC
CATAAAGGACATCAGCACAGCTTCACCTCTGTTCCTTGGTTCCACCACAG
AAGCCCCTGTGGGGGAGAAGGAATTCAGCATCCTGGACCTCTCCTTTAAC
TGGTACACGGTCACAGGCTTCGTCATCACCTGGCTGATAGGTATTCCGCT
GAGTTACATCCTGAAGTCTGGGCCTGATTACAAACCGAACCCGAAGCTCC
TGTCTCCGGTGGTGCAGCCGTTCGTCCATTACAAGCTGACGCCGTCGGAT
GAACCCCACCAGTTGAACCTAGAGAAACCCGAAAAGGTCGCAAGCTTTCT
AGACCAT
BO30136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smvt-RA | 1776 | CG2191-PA | 1..1773 | 17..1789 | 8865 | 100 | Plus |
| CG2187-RB | 1872 | CG2187-PB | 996..1202 | 1012..1218 | 285 | 75.8 | Plus |
| CG2187-RA | 1872 | CG2187-PA | 996..1202 | 1012..1218 | 285 | 75.8 | Plus |
| CG2187-RB | 1872 | CG2187-PB | 124..295 | 140..311 | 230 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smvt-RA | 1996 | CG2191-RA | 105..1881 | 13..1789 | 8870 | 99.9 | Plus |
| CG2187-RB | 2021 | CG2187-RB | 1067..1273 | 1012..1218 | 285 | 75.8 | Plus |
| CG2187-RA | 2580 | CG2187-RA | 1626..1832 | 1012..1218 | 285 | 75.8 | Plus |
| CG2187-RB | 2021 | CG2187-RB | 195..366 | 140..311 | 230 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31759991..31760837 | 1373..527 | 4235 | 100 | Minus |
| 3R | 32079331 | 3R | 31759519..31759936 | 1789..1372 | 2090 | 100 | Minus |
| 3R | 32079331 | 3R | 31761079..31761475 | 409..13 | 1970 | 99.7 | Minus |
| 3R | 32079331 | 3R | 31760896..31761015 | 527..408 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 31756166..31756372 | 1218..1012 | 285 | 75.8 | Minus |
| 3R | 32079331 | 3R | 31752761..31752915 | 1167..1013 | 205 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:34:29 has no hits.
BO30136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:28 Download gff for
BO30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 107..1879 | 17..1791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:23 Download gff for
BO30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 109..1881 | 17..1791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:21 Download gff for
BO30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smvt-RA | 109..1881 | 17..1791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:21 Download gff for
BO30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31759516..31759935 | 1373..1791 | 99 | <- | Minus |
| 3R | 31759992..31760836 | 528..1372 | 100 | <- | Minus |
| 3R | 31760896..31761013 | 410..527 | 100 | <- | Minus |
| 3R | 31761079..31761471 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:23 Download gff for
BO30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27585238..27585657 | 1373..1791 | 99 | <- | Minus |
| arm_3R | 27585714..27586558 | 528..1372 | 100 | <- | Minus |
| arm_3R | 27586618..27586735 | 410..527 | 100 | <- | Minus |
| arm_3R | 27586801..27587193 | 17..409 | 100 | | Minus |
BO30136.pep Sequence
Translation from 16 to 1807
> BO30136.pep
MSSLLNATVLATAATVVPDSQFVFNATDYGVFALVLSISAAIGVYFGFFA
KGEDTTEEYLMGGKRMKTIPIAISLVASQLSAISIMTIPAEMYAYGINWV
FNVVCMVLVVPLLNYLVIPVFYNNNITNCYEYLEMRFCRKVRVLQTFIFI
LTMFFMLPIFIFLPSLAFAQVTGFNVHLINTVVCSICVFYTMFGGIKAVV
WTDVIQAAIMVASVVLVGVLGAHRVGGFFEVLRIAGEGGRLDINYNFDLT
TRSTIWNIFTSATMMWTGYVGLNQSCVQRIVSLPSLGHARRSLVLFGFGF
ILIMFFNCFTGIVIYSRFHDCDPIQSGHVSKVDKMVPYFVQDTVGNLWGM
PGVFISCVFSAALSTLSASINSLGGVVYFDYIKPHIRHTEHRANVIMKLF
VFFTGIYCILGGMVIENFNSILQVIYSIGGMSFGSTCGVFMLGMLVPKSH
GRAALVGVLASIACMATIVILSWGRNHYDTLPTSTSACPASLNGTIKDIS
TASPLFLGSTTEAPVGEKEFSILDLSFNWYTVTGFVITWLIGIPLSYILK
SGPDYKPNPKLLSPVVQPFVHYKLTPSDEPHQLNLEKPEKVASFLDH
BO30136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smvt-PA | 591 | CG2191-PA | 1..591 | 1..591 | 3069 | 100 | Plus |
| CG2187-PB | 623 | CG2187-PB | 1..591 | 1..578 | 1620 | 52.6 | Plus |
| CG2187-PA | 623 | CG2187-PA | 1..591 | 1..578 | 1620 | 52.6 | Plus |
| salt-PC | 621 | CG2196-PC | 5..604 | 1..588 | 1575 | 51.2 | Plus |
| salt-PB | 622 | CG2196-PB | 5..605 | 1..588 | 1568 | 50.7 | Plus |
