BO30139.complete Sequence
1021 bp assembled on 2011-09-12
GenBank Submission: KX794250
> BO30139.complete
GAAGTTATCAGTCGACATGGATGCAACATCAATAATAACGCAAGTTTCCC
GCGACGACGAGCAACTGAACGTCTATCCCAGCTATCCCAATGACAAAGAC
GATGTGGATCGTTTAAAGCCACAGAAGCGAGGATTATTCCATTCTCTGCT
TTGCTGCTGGCGACGAAACCGAACGAAAACCAACCAGAATGGCACACAAA
TCGATGGATCGACAACACCGCCACCATTACCGGACCAACAAAGGTACCTA
CTACCTCAGGTTAGGCTTACCGATATGCACAGAAAGTGCATGGTGATCGA
TTTGGATGAGACCCTAGTGCACAGTAGTTTTAAGCCCATACCGAATGCTG
ATTTCATAGTGCCCGTGGAGATCGATGGAACCGTACATCAGGTGTACGTC
CTGAAGCGACCGCACGTGGACGAGTTTCTGCAGAAGATGGGCGAACTATA
CGAGTGCGTTCTGTTCACAGCATCACTAGCCAAATACGCAGATCCCGTCG
CCGATCTGTTAGACAAGTGGAATGTGTTTCGTGCAAGACTGTTTAGGGAA
TCATGCGTTTATTACAGGGGTAATTACATTAAGGATCTGAATCGTCTGGG
GCGGGACCTTCAGAAGATTGTCATTGTCGACAATTCACCGGCCAGTTATA
TCTTTCATCCAGACAATGCAGTTCCTGTTAAATCCTGGTTTGACGATGTC
ACCGACTGCGAACTGCGCGAACTGATCCCGCTCTTTGAGAAGCTTAGCAA
AGTTGATTCCGTCTACTCGGTGCTCTGCAATTCGAACCAGCCGCTGAACA
ATCAGACAAACCAGCAGCAGCATCCCCAGGAACTGCAGCAGGCGCCGAAC
CAGCTGCATCAGCAGCTCCAACAGCAGCAACAACAACAGACCATCTCTGC
CACGACAGTTATTACCCAGGCAACCACATTGTCTGCTCCGACCATGTTGA
ACCAGCAGCAGACAAGTCCGCCCAGCCCACAAAGCGAGTTGCTGCAAAAG
ACGGCAAGCTTTCTAGACCAT
BO30139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5830-RA | 990 | CG5830-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
CG5830-RB | 1059 | CG5830-PB | 152..1056 | 99..1003 | 4525 | 100 | Plus |
CG5830-RB | 1059 | CG5830-PB | 1..85 | 17..101 | 425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5830-RA | 3534 | CG5830-RA | 483..1469 | 17..1003 | 4935 | 100 | Plus |
CG5830-RB | 3603 | CG5830-RB | 634..1538 | 99..1003 | 4525 | 100 | Plus |
CG5830-RB | 3603 | CG5830-RB | 483..567 | 17..101 | 425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15994734..15995066 | 1003..671 | 1665 | 100 | Minus |
3L | 28110227 | 3L | 15995610..15995847 | 334..97 | 1190 | 100 | Minus |
3L | 28110227 | 3L | 15995355..15995541 | 519..333 | 935 | 100 | Minus |
3L | 28110227 | 3L | 15995133..15995288 | 672..517 | 780 | 100 | Minus |
3L | 28110227 | 3L | 16003899..16003980 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1059..1181 | 786..913 | 231 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6918 | 784..928 | 224 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6879 | 798..960 | 222 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6907 | 784..908 | 217 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2471 | 808..965 | 216 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6832 | 784..889 | 215 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2507 | 786..961 | 210 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6850 | 784..889 | 208 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6923 | 806..887 | 205 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2422 | 812..928 | 204 | 65 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1152 | 811..907 | 194 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2447..2653 | 806..1006 | 172 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1627 | 811..919 | 171 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2476 | 784..888 | 165 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6844 | 831..965 | 159 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2721..2833 | 786..896 | 155 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2665 | 810..888 | 154 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1497..1576 | 806..888 | 154 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2818..2922 | 786..887 | 149 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2374 | 814..888 | 145 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2851 | 827..928 | 145 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2893..2986 | 794..888 | 139 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6828 | 849..960 | 137 | 62.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1049..1140 | 840..928 | 136 | 65.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3322 | 851..888 | 136 | 84.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2363 | 836..889 | 135 | 72.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6799 | 831..908 | 135 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1595 | 850..928 | 133 | 67.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 967..1010 | 846..889 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6789 | 858..928 | 127 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2348 | 847..889 | 125 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1594 | 810..849 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2341 | 853..888 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2661 | 828..895 | 115 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6464..6556 | 796..892 | 114 | 63.3 | Plus |
BO30139.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:46 Download gff for
BO30139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5830-RA | 482..1468 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:48 Download gff for
BO30139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5830-RA | 483..1469 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:09 Download gff for
BO30139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5830-RA | 483..1469 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:09 Download gff for
BO30139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15995610..15995845 | 99..334 | 100 | <- | Minus |
3L | 16003899..16003980 | 17..98 | 100 | | Minus |
3L | 15994732..15995066 | 671..1005 | 99 | <- | Minus |
3L | 15995135..15995288 | 517..670 | 100 | <- | Minus |
3L | 15995358..15995539 | 335..516 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:48 Download gff for
BO30139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15988458..15988639 | 335..516 | 100 | <- | Minus |
arm_3L | 15987832..15988166 | 671..1005 | 99 | <- | Minus |
arm_3L | 15988235..15988388 | 517..670 | 100 | <- | Minus |
arm_3L | 15988710..15988945 | 99..334 | 100 | <- | Minus |
arm_3L | 15996999..15997080 | 17..98 | 100 | | Minus |
BO30139.pep Sequence
Translation from 16 to 1021
> BO30139.pep
MDATSIITQVSRDDEQLNVYPSYPNDKDDVDRLKPQKRGLFHSLLCCWRR
NRTKTNQNGTQIDGSTTPPPLPDQQRYLLPQVRLTDMHRKCMVIDLDETL
VHSSFKPIPNADFIVPVEIDGTVHQVYVLKRPHVDEFLQKMGELYECVLF
TASLAKYADPVADLLDKWNVFRARLFRESCVYYRGNYIKDLNRLGRDLQK
IVIVDNSPASYIFHPDNAVPVKSWFDDVTDCELRELIPLFEKLSKVDSVY
SVLCNSNQPLNNQTNQQQHPQELQQAPNQLHQQLQQQQQQQTISATTVIT
QATTLSAPTMLNQQQTSPPSPQSELLQKTASFLDH
BO30139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5830-PA | 329 | CG5830-PA | 1..329 | 1..329 | 1738 | 100 | Plus |
CG5830-PB | 352 | CG5830-PB | 1..352 | 1..329 | 1704 | 93.5 | Plus |
Dd-PB | 240 | CG1696-PB | 51..230 | 83..253 | 358 | 43.3 | Plus |
Dd-PA | 243 | CG1696-PA | 54..233 | 83..253 | 358 | 43.3 | Plus |
CG8584-PA | 293 | CG8584-PA | 89..275 | 83..253 | 286 | 37.4 | Plus |