BO30142.complete Sequence
2221 bp assembled on 2011-10-14
GenBank Submission: KX795699
> BO30142.complete
GAAGTTATCAGTCGACATGTCGGGTAGGCGGGCCCAATCTCTGCCGGCGC
ACATGTTGGAGCCAGCGAAGCCGCAACGCGGACGCTGTGTAGCTGCCATC
TGCTTCTCGTGGAAGGTGCTCACCTGCATTGTGTCCCATGTGCTGCTCGT
GCTTCTCGTGGTTTCCTATTGCGTGGGCGGTGCCTACCTCTTCCAGCATC
TCGAACGACCCCACGAACTAGAGGTGAAGCGAGACATACAGAATCTTCGC
GTTAATCTCACGGAGAATATCTGGCTACTGTCCGACGACGCAGTGGTCCT
AAGGGAAAGCGATTGGATGGCCAATGTCAGCAAGCACCTGGCCAATTTTG
AAAAGCAAATCCTTACGGCCATCAAGGCCGACGGCTGGGATGGCGACGAG
GATCTGCGCAAGTCCCAGTGGACCTTTGCCGGATCCCTGTTCTACTCGAT
TATTGTGATAACGACCATAGGCTATGGTCACATATCGCCGCGTACGGATT
GGGGCAAGGTGACAACGATTTTCTACGCCATTGTGGGCATTCCGCTGATG
CTCATCTGCTTGTCCAACATTGGCGATGTCATGGCCACATCATTTCGGTT
TCTGTACTGGAGAATATGCTGCTATGTGTGCACCCGCACGGCCAAACGTC
CGAGGAATGCCCGATCCCGGCAGAGATCGATGCGCTCTCAGCGCCATGCC
CGATCCCAGCCGCCGCCCTCGTTCCGGCGCTCCATGAAGATGACCCAACG
GTCTGGGAATGACTCGGGTCTGGGTCCTTCCATGGGTCATGCCTATTCAG
ATCCCGACCTGCGCACCATGGGCCGGGGCTACGATGACCGCGAGTTCGGA
CATCGGAGCAGTGGAGGCGGACGCAATCGTCGTCAGCAGCAGCAGCAGCA
TTTGCATCACGATCCTCGCCAGCGTCACACCATTTACGGAGATGGGTACG
AAACTCAGACCCTGAACAGATCCAACCGCTACAGTAGCCGGCAAAGACAA
CGGGATCGGATGAGGGACAGACACACGGTAGAAAGGGAGCGCTACTCTCG
ATCCCACTTGGATGCTGGATCCATTGAGGACTTCGGTGACATGCAACCTC
CTGCGAAAAGAGCTGCCAGTGTGCGATCGGTTCGATCGCCACACAATCAG
GAATCTTCCAAAGCGTCCAGAGAACTGCATCGTCTTCACTCGGCACCTGG
GAGAAGTAGGGCCAAGTCCGTGGATCCCAGGCACGTTTCTTCACATTACG
AAGACGTCGACGAGGACGTGGTGAGGAAAACACCAATTATACCAAATAGG
TATGCTTTAGATGACTTCGGGGGCAACAGAAGACAAGCAGCTCCAAGGAG
TCAATCCATGCCCAGATCTGCTCACCAAAGGCAACGCCAGAAGGACAGAG
AACGGGAACGATCTCCACAGCCGCCACCGCAGAGCTCCTATCGCCAACAG
CATGATAGACGAGCTGGAAGTCTGGGCAGGCAATCATCTCGCTATGGCAA
CCATCTCGAACTTCCCGACTATGATGCTCCACCGCCGGGACGGGACCATC
GACGGGATAGGCGTGGTCACTCCCAGGGTCGCTACGAGGACTACGTGGAA
GAGAGCTTCGATGAGGGATCCCTTTACGGAGACAATAACTACGAGGATTA
TCCGCCTGAGCGCCACCACTCAAGGAGTCGAGAACCAAAAAGAAATCGCC
GAAGAGAGCGGGCTGAACGTTTGCCCCCTTCCCCGAGAATCATGTCACCA
ATGGGATTTCCGGTCCAGCGGCAAATCCGTCGGCGACCCAGCTACGATTA
CGACGACGATGACTCTATGTACGGGGATGAGTATGGGGACTATGGAGATC
TGCTGCCCAAGGATCGACCTGTCCCCATTTGGTTATGCGTCTTTCTGGTA
GTGAGCTACATCCTTGGCGGAGCTGTTCTTTTTGCGTACTGGGAGAACTG
GTCCTTCTTGGATTCCGCCTACTTTTGCTTCATTACACTGACAACAATCG
GATTTGGTGACTTTGTCCCCGCGAAAGGAGTCAAGGACGAGTCGGAGCAG
TCCATCGCCTATTGCTCGCTGTACCTTCTTTTCGGCATTGCCTTGTTGGC
CATGAGTTTTAACCTGGTCCAGGAGGAGTTCATTGCCAATGTGAAGGAGG
TAGCCCGCCGTCTGGGCATTCTTAAGGATGATGACGACGAGCAGGATGAG
GATGCAAGCTTTCTAGACCAT
BO30142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9194-RA | 2190 | CG9194-PA | 1..2187 | 17..2203 | 10935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9194-RA | 2974 | CG9194-RA | 241..2428 | 16..2203 | 10940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1239818..1241222 | 597..2001 | 7025 | 100 | Plus |
| 3L | 28110227 | 3L | 1236835..1237084 | 222..471 | 1250 | 100 | Plus |
| 3L | 28110227 | 3L | 1236570..1236781 | 16..227 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 1241276..1241479 | 2000..2203 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 1239626..1239756 | 469..599 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:44:31 has no hits.
BO30142.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:35 Download gff for
BO30142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9194-RA | 239..2425 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:34 Download gff for
BO30142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9194-RA | 242..2428 | 17..2205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:20 Download gff for
BO30142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9194-RA | 242..2428 | 17..2205 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:20 Download gff for
BO30142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1236837..1237083 | 224..470 | 100 | -> | Plus |
| 3L | 1239628..1239754 | 471..597 | 100 | -> | Plus |
| 3L | 1236571..1236777 | 17..223 | 100 | -> | Plus |
| 3L | 1239819..1241221 | 598..2000 | 100 | -> | Plus |
| 3L | 1241277..1241479 | 2001..2205 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:34 Download gff for
BO30142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1236571..1236777 | 17..223 | 100 | -> | Plus |
| arm_3L | 1236837..1237083 | 224..470 | 100 | -> | Plus |
| arm_3L | 1239628..1239754 | 471..597 | 100 | -> | Plus |
| arm_3L | 1239819..1241221 | 598..2000 | 100 | -> | Plus |
| arm_3L | 1241277..1241479 | 2001..2205 | 99 | | Plus |
BO30142.pep Sequence
Translation from 16 to 2221
> BO30142.pep
MSGRRAQSLPAHMLEPAKPQRGRCVAAICFSWKVLTCIVSHVLLVLLVVS
YCVGGAYLFQHLERPHELEVKRDIQNLRVNLTENIWLLSDDAVVLRESDW
MANVSKHLANFEKQILTAIKADGWDGDEDLRKSQWTFAGSLFYSIIVITT
IGYGHISPRTDWGKVTTIFYAIVGIPLMLICLSNIGDVMATSFRFLYWRI
CCYVCTRTAKRPRNARSRQRSMRSQRHARSQPPPSFRRSMKMTQRSGNDS
GLGPSMGHAYSDPDLRTMGRGYDDREFGHRSSGGGRNRRQQQQQHLHHDP
RQRHTIYGDGYETQTLNRSNRYSSRQRQRDRMRDRHTVERERYSRSHLDA
GSIEDFGDMQPPAKRAASVRSVRSPHNQESSKASRELHRLHSAPGRSRAK
SVDPRHVSSHYEDVDEDVVRKTPIIPNRYALDDFGGNRRQAAPRSQSMPR
SAHQRQRQKDRERERSPQPPPQSSYRQQHDRRAGSLGRQSSRYGNHLELP
DYDAPPPGRDHRRDRRGHSQGRYEDYVEESFDEGSLYGDNNYEDYPPERH
HSRSREPKRNRRRERAERLPPSPRIMSPMGFPVQRQIRRRPSYDYDDDDS
MYGDEYGDYGDLLPKDRPVPIWLCVFLVVSYILGGAVLFAYWENWSFLDS
AYFCFITLTTIGFGDFVPAKGVKDESEQSIAYCSLYLLFGIALLAMSFNL
VQEEFIANVKEVARRLGILKDDDDEQDEDASFLDH
BO30142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9194-PA | 729 | CG9194-PA | 1..729 | 1..729 | 3901 | 100 | Plus |
| CG1688-PA | 918 | CG1688-PA | 79..296 | 44..226 | 303 | 33.5 | Plus |
| CG8713-PA | 395 | CG8713-PA | 32..253 | 40..261 | 300 | 33.3 | Plus |
| CG8713-PA | 395 | CG8713-PA | 285..384 | 619..714 | 278 | 49 | Plus |
| CG1688-PA | 918 | CG1688-PA | 801..917 | 598..722 | 269 | 44.8 | Plus |
| CG10864-PA | 389 | CG10864-PA | 44..203 | 35..197 | 262 | 33.7 | Plus |
| CG34396-PC | 564 | CG34396-PC | 113..290 | 40..222 | 233 | 27.9 | Plus |
| CG10864-PA | 389 | CG10864-PA | 235..368 | 619..722 | 178 | 30.6 | Plus |
