BO30150.complete Sequence
3439 bp assembled on 2011-10-14
GenBank Submission: KX798907
> BO30150.complete
GAAGTTATCAGTCGACATGGAAGCCGCATCACCGAGGGAAACCCAGAAGA
ACCCGAATCCGATCGAGGCGCTGAGCAAAGATGAAATCATCAGCAAATAC
AAAGGCCTGCTCAACATCGCTAAAAAGGCGAAACAGGCAAAAGATGAACT
CACCGAGGAAAATCACCGACTCAAGGATGCCCTTAAACGGGCGGCGGAGA
AGCAGAGCAGCCTGCCAGCCATGCAGGAAATGGTCCAGGACTTCACCGAT
AAGAACCTCATCCTCACCGAGGAAGTGAATAATCTGAAACGAAAGACCAA
AGAGGATGCCGATCGACTGACGCAATTCGAGATCGAGAACGAGAGCCTAA
AGCGCCAACTTGGGCGACTGAGTGATGAAAACGATGCCCTCCTTGCCAAT
GTGGATCGCATGGAAAAGGCTATGCAACAGGTCAATGCTCTGGGTAACGA
GCAGCGCAAGAATCTGGAACTTTTGGAAGTGGACATTGCCAAAATTAAGG
AAGCGGAGGCGGAAAACGCTAGTCTTCGCCAGCAAGTCGCCACGATGGAA
GAAGAGTCGAGTGTGCTGCAGCAAAAGTACCAAAACATCAAGGAACTTAA
CTCTGAGCAACGCAAGAAGTTTAATTCTCTAAAGGACCGCTTCATTGATG
TACACCGCAAGTTGAAGAACCTCAAGGAGTGCAAGTGCGTGCTGCTGGAA
ACGCAGCACGAGTACGCCGCATCCGTTTCCAAATGGCAGGTGGAGATTAT
CAAAGCTTCGCAACTGTTGTGCGCAAAGATGGCATCCCTGCAGGCCGAGA
ATGAAAAACTGAAGCTGAACAATGGAAAGTCAGACAATAATCCTCAAACA
ATTGACACTGGAATTGACCGCAAGCGCTTACTGCAAAGAGTTCAGGAAAT
GGATCGGCTAGCCAAAATAGTGAAGCAGAAGCAAAAGAACCAAAGGAGCA
ATTTGAATGTGGAGTACCTACTTAAGAAGATAACCGCTCTCGAAGAGCTT
GCAGTCATTATAAAGCAGCAGCATAGAATTGACAAGGAACAATTGATAAG
TGTAACGAAGGAGCAGGAAAACACCAAAAATCACGCCAGGAACCTTAATG
TAAGCTTATTCCAGACCAAGCTTGATCAAATGCAAAATCTGGTCAAAGTC
ATTGCAAAGGAGCGTGATAATCAGCAGAGGAAGTTGCAGGAGTTGGAAGC
CATCTGCATAGAACTGCGCCAACACAACGAGGATTTGCTTACGCGATACC
ACCTCAAGGAGCAAGAGCATGGAGAGTTGCTAACGGAGATGCGGGAACTG
AACGAGGCGCTCAAAGGACGCGGTGATGCCATTTCACGCCTTCAAGAACA
GCACGAAGCGGAGGTCAAGCGACAACGAGACTTGGAGGCTCAACTATCTA
ATAGTCAGCAGGCGGCGCAGGAGAAGTTACAGAAGATCAAACAACTCCAG
AGCCGTGTTGAGGAATTGGAGCAGGCGAATGCTGATGCCCAGAGTGATGT
TCTGTCGACATCCACAATATCACGAGCCGAAGAACTAAGCCGCCTGCGTG
AACTGGACGAAGGCTACGAGGAGAAGTACCATAAGCTCAGAGCCATAGCT
GCCAAGCTGAAAAAGAAACTGCAGGAGCAGACGCAGCAGCTGAATGAAAT
GGAACAGAGCGGTGCCCTAAAGGAGGAGTTGGAGGCAATCAAGTTGGCAC
AGGCCCAACTGCAACAGGATTTAAATGCAGCTCGAGCTGAAAACCAGAAG
CTAAAGTCCAAGGAGAAAGTAAAGCACTCCAGTGTCCTTAATTTGGAAAT
TGAAGCAGCTGAAAAATCCCTGAGCGAAGTTAGTGCGAAGCTGACAGCTA
AGTCTAGCGAACTAGAAGCCGTTAAGGAATCACTGGCCAGCAAGGAAAAC
ACCATCGTCCAGCTGCGCAAGGAGATCGCTATCCTAGAGGAGGCCAAAAA
CGGCGAAGCGGCCCACTCCCTAGAACTTAAGGAGCAGATTGATCGCATGC
AGGTCCAGGTCAAAGACGCAGTTCACAGCAAGCAACAGGCGCTCACTCAG
AACAAGGATTTGGAACATGGCGTTGAACAGGCCAAGCTCGAGGCGGAGCA
ATTGCGTCTCCAGCTGTCGGAGAGCGCCCAACAATACGAATCGAAGCTAA
ACACGGCCACCCAACAACTACTAAGCCAAACCCAGGAGCTGGAAATGCAC
CTGGCAGAGCAAAAGCGATTGGAGACGGCGCTTCGAAATGCGGAACGAGC
TCTGGAGGACCTGCGAGTAGAGTACACCGAATACAAGTTGAAGGCACAGT
CTGTGCTGCGCAAAAACCAAAATAAGGGCTCCAACCGCGAACAGGAGTTG
GAAGAAGAGTTGGTTGCGCTTCGAGAGAGTGAACGCAATCTGCGCGCCAG
CAACGATGGAAGAGCTGCCCGCCTGGCCCAGTTGGATAGTCAAATAGAGG
AATTGCGACAGGATAACACTGATCTGCAAAAGCGTAGCAAAGAGCTCGTC
TCTCTAGTTGACGAACTGCGTCAGCAAAACGACCTGCTGTCGCTAGAAAA
CCAACGCCAGTTGCAATTCCAACACGACCTGATGCAGCAGCATCGCCAGC
AAGTTGATGAGCTGGACGCCGGGCACCAGTTGCAATTAACGCAGGTGCAG
GAGCAACTGGAGGAAGCGCAAAAGATGCAAGCAAACGTCTCTCAGCATAC
CACTGCATCCGCCGCGAGCGTGGACACCAGTCCAGAGCAGGCAAAGATCG
ATTACTTGCTTATGGACCACGAAACAGGCTTGGATGGCCACGCTGGAGAC
GTCTCTCTGGCCCAACTGGCTGCTCAGCGAAAGATATCTACTGCCTCGAG
ACGTTCCCACGACTTCATGCCGCTTGACGAGCTGCTCAACACATCAATGA
ACCAAATAACCAGCGATACCGTGACTACCATCTCTAATTTCGGACGCAGC
GTTTCGCAGCAGGAGGACGAGGAAGCGGAAATGGCCGCACGGGGAGACTT
TTCCGTCCAAAGTGCCCAGCTTCAGGCCACAAAAGAACGCCTAAGCATCC
AGGAAAGTCGTGTCAAGCACTTGACTGCCCTGTTGGCCGAAAACGAACAG
GATTTGGCTAAACTGACCCAAATGAACGACATGCTCAAGGAAGAATTGCG
CCGCCAAGAGCGCTCCGAGGAACGTGAACAACACATGCACAACTCCGAGT
ACTTGAAGAACGTCTTCTTAAAGTTCCTTACGTTAAACAATGTCGATGAG
CGGCAGCGCTTGGTTCCCGTGCTAAATACCATTCTCCGCCTGAGTCGCAA
CGAAATGGAAATGCTGAACTGTGTGGCCAAGGGACAGAAAGTTTCTGCAG
ATGGTAGCAGTCGCAGCTGGACGGGATTCCTCACTGCGTGGAGTGGAGGA
GGCAGTCCCAATAATAACAACGCAAGCTTTCTAGACCAT
BO30150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC185-RB | 3408 | CG3532-PB | 1..3405 | 17..3421 | 17010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC185-RB | 4040 | CG3532-RB | 158..3564 | 15..3421 | 17020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12011182..12014259 | 146..3223 | 15375 | 100 | Plus |
| 3R | 32079331 | 3R | 12014321..12014440 | 3222..3341 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 12011020..12011122 | 44..146 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 12014502..12014583 | 3340..3421 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:45:40 has no hits.
BO30150.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:37 Download gff for
BO30150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3532-RB | 150..3554 | 17..3423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:07 Download gff for
BO30150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3532-RB | 160..3564 | 17..3423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:52 Download gff for
BO30150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC185-RB | 160..3564 | 17..3423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:52 Download gff for
BO30150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12010931..12010960 | 17..46 | 100 | -> | Plus |
| 3R | 12011023..12011122 | 47..146 | 100 | -> | Plus |
| 3R | 12011183..12014259 | 147..3223 | 99 | -> | Plus |
| 3R | 12014323..12014440 | 3224..3341 | 100 | -> | Plus |
| 3R | 12014504..12014583 | 3342..3423 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:07 Download gff for
BO30150.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7836653..7836682 | 17..46 | 100 | -> | Plus |
| arm_3R | 7836745..7836844 | 47..146 | 100 | -> | Plus |
| arm_3R | 7836905..7839981 | 147..3223 | 99 | -> | Plus |
| arm_3R | 7840045..7840162 | 3224..3341 | 100 | -> | Plus |
| arm_3R | 7840226..7840305 | 3342..3423 | 97 | | Plus |
BO30150.pep Sequence
Translation from 16 to 3439
> BO30150.pep
MEAASPRETQKNPNPIEALSKDEIISKYKGLLNIAKKAKQAKDELTEENH
RLKDALKRAAEKQSSLPAMQEMVQDFTDKNLILTEEVNNLKRKTKEDADR
LTQFEIENESLKRQLGRLSDENDALLANVDRMEKAMQQVNALGNEQRKNL
ELLEVDIAKIKEAEAENASLRQQVATMEEESSVLQQKYQNIKELNSEQRK
KFNSLKDRFIDVHRKLKNLKECKCVLLETQHEYAASVSKWQVEIIKASQL
LCAKMASLQAENEKLKLNNGKSDNNPQTIDTGIDRKRLLQRVQEMDRLAK
IVKQKQKNQRSNLNVEYLLKKITALEELAVIIKQQHRIDKEQLISVTKEQ
ENTKNHARNLNVSLFQTKLDQMQNLVKVIAKERDNQQRKLQELEAICIEL
RQHNEDLLTRYHLKEQEHGELLTEMRELNEALKGRGDAISRLQEQHEAEV
KRQRDLEAQLSNSQQAAQEKLQKIKQLQSRVEELEQANADAQSDVLSTST
ISRAEELSRLRELDEGYEEKYHKLRAIAAKLKKKLQEQTQQLNEMEQSGA
LKEELEAIKLAQAQLQQDLNAARAENQKLKSKEKVKHSSVLNLEIEAAEK
SLSEVSAKLTAKSSELEAVKESLASKENTIVQLRKEIAILEEAKNGEAAH
SLELKEQIDRMQVQVKDAVHSKQQALTQNKDLEHGVEQAKLEAEQLRLQL
SESAQQYESKLNTATQQLLSQTQELEMHLAEQKRLETALRNAERALEDLR
VEYTEYKLKAQSVLRKNQNKGSNREQELEEELVALRESERNLRASNDGRA
ARLAQLDSQIEELRQDNTDLQKRSKELVSLVDELRQQNDLLSLENQRQLQ
FQHDLMQQHRQQVDELDAGHQLQLTQVQEQLEEAQKMQANVSQHTTASAA
SVDTSPEQAKIDYLLMDHETGLDGHAGDVSLAQLAAQRKISTASRRSHDF
MPLDELLNTSMNQITSDTVTTISNFGRSVSQQEDEEAEMAARGDFSVQSA
QLQATKERLSIQESRVKHLTALLAENEQDLAKLTQMNDMLKEELRRQERS
EEREQHMHNSEYLKNVFLKFLTLNNVDERQRLVPVLNTILRLSRNEMEML
NCVAKGQKVSADGSSRSWTGFLTAWSGGGSPNNNNASFLDH
BO30150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC185-PB | 1135 | CG3532-PB | 1..1135 | 1..1135 | 5570 | 100 | Plus |
| Golgin245-PA | 1489 | CG3493-PA | 390..1473 | 18..1099 | 406 | 20.6 | Plus |
| lva-PD | 2779 | CG6450-PD | 565..1733 | 6..1058 | 390 | 21.2 | Plus |
| lva-PC | 2779 | CG6450-PC | 565..1733 | 6..1058 | 390 | 21.2 | Plus |
| Gmap-PA | 1398 | CG33206-PA | 145..1291 | 27..1135 | 378 | 20 | Plus |
| lva-PD | 2779 | CG6450-PD | 238..1278 | 116..1100 | 309 | 20.2 | Plus |
| lva-PC | 2779 | CG6450-PC | 238..1278 | 116..1100 | 309 | 20.2 | Plus |
| lva-PD | 2779 | CG6450-PD | 1150..2292 | 40..1117 | 305 | 20.9 | Plus |
| lva-PC | 2779 | CG6450-PC | 1150..2292 | 40..1117 | 305 | 20.9 | Plus |
| lva-PD | 2779 | CG6450-PD | 984..2061 | 59..1054 | 299 | 19.7 | Plus |
| lva-PC | 2779 | CG6450-PC | 984..2061 | 59..1054 | 299 | 19.7 | Plus |
| lva-PD | 2779 | CG6450-PD | 1439..2309 | 38..914 | 267 | 20.7 | Plus |
| lva-PC | 2779 | CG6450-PC | 1439..2309 | 38..914 | 267 | 20.7 | Plus |
| lva-PD | 2779 | CG6450-PD | 62..737 | 285..1052 | 250 | 21.7 | Plus |
| lva-PC | 2779 | CG6450-PC | 62..737 | 285..1052 | 250 | 21.7 | Plus |
| Golgin245-PA | 1489 | CG3493-PA | 156..790 | 408..1057 | 234 | 22.5 | Plus |
| lva-PD | 2779 | CG6450-PD | 1965..2728 | 38..801 | 206 | 19.9 | Plus |
| lva-PC | 2779 | CG6450-PC | 1965..2728 | 38..801 | 206 | 19.9 | Plus |
| lva-PD | 2779 | CG6450-PD | 1793..2658 | 52..908 | 195 | 19.7 | Plus |
| lva-PC | 2779 | CG6450-PC | 1793..2658 | 52..908 | 195 | 19.7 | Plus |
| lva-PD | 2779 | CG6450-PD | 44..445 | 496..896 | 170 | 21.1 | Plus |
| lva-PC | 2779 | CG6450-PC | 44..445 | 496..896 | 170 | 21.1 | Plus |
