BO30152.complete Sequence
1057 bp assembled on 2011-09-12
GenBank Submission: KX793924
> BO30152.complete
GAAGTTATCAGTCGACATGGGCAACGCCAGCTCCTCCGTGCACATGCAAC
GCGAGCGCCACAAGTCGACCGACTTGTCCACGCCGAGCTCTCCCGCACAT
TTCCGCGATTCGATTGGTGGAGGAGGAGCGGGACAGGGCGGGAGTGCTGG
CGCAGCAGCTCTGGGCGCTGCAGCGGGGGCGGTGGGAGCTGCGGGGGGTG
GAGGAGGAGGCGGCGGAGGCCAAGCTTTCTCGTTCGACAAAAAACATACG
GCAGTCTTGAACGAGGGCTCGTCGCAAGAAGACGACGACCCGTACTACAC
GGGAACTGGAACTGGATCCACTAGACGAGGCACCGCACACGACGACGCTA
CATCAGCTGTTACCCGAGACCACTCCAGCATGGACAACAACGAGGAGGAG
GAGGAGGCAGCGGTAGGAGCGGAGCCAGCGACTGGATCTCAGTTAACCGG
CGATGAGGACGACATCCGGAAGACGGCACTGCCCACAGTTCTGCGGTGGG
ACGGCGGCGGCAAGAACGTCACCATCTCGGGCACATTCTCCGATTGGAAG
CCCATGGCCATGGTGCGCAGCCATCAGAACTTCGTGACCATCATAGATCT
GCCGGAGGGCGACCATCAGTACAAGTTCTGCGTGGACGGCGAGTGGAAGC
ACGATCCCAAGCTGAAAAGCGTGGAGAACGCCGAGGGACAGAGAAATAAC
TTAGTGTCCGTGCGAGAATCCGATTTCGAGGTGTTCCAGGCCCTAGCCAA
AGACAGCGAGAACGTGACCAACTATGCGGAGAAGGAGTACTCGCAGGAGG
TGCCGCAGGTGAAGCCCTGGGAGAAGGTATCTGGCCCGCCCGTTCTGCCG
CCCCATCTGCTCCAGGTCATCCTCAACAAGGATACACCGCTATCGTGTGA
ACCCACTCTGCTGCCGGAACCCAACCACGTGATGCTTAACCACTTGTACG
CCCTGTCTATCAAGGATGGCGTCATGGTCCTGAGTGCCACGCACAGGTAT
CGCAAGAAGTACGTCACCACGCTGCTGTACAAGCCCATTGCAAGCTTTCT
AGACCAT
BO30152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alc-RA | 1026 | CG8057-PA | 1..1023 | 17..1039 | 5100 | 99.9 | Plus |
| alc-RB | 663 | CG8057-PB | 1..660 | 380..1039 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alc-RA | 1544 | CG8057-RA | 334..1357 | 16..1039 | 5105 | 99.9 | Plus |
| alc-RB | 981 | CG8057-RB | 1..794 | 246..1039 | 3955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9136952..9137600 | 664..16 | 3230 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9135765..9135996 | 895..664 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 9135562..9135706 | 1039..895 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:34:53 has no hits.
BO30152.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:50 Download gff for
BO30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 352..1374 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:16 Download gff for
BO30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 335..1357 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:48 Download gff for
BO30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alc-RA | 335..1357 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:48 Download gff for
BO30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9135560..9135705 | 896..1041 | 98 | <- | Minus |
| 2R | 9135765..9135995 | 665..895 | 100 | <- | Minus |
| 2R | 9136952..9137599 | 17..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:16 Download gff for
BO30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5023065..5023210 | 896..1041 | 98 | <- | Minus |
| arm_2R | 5023270..5023500 | 665..895 | 100 | <- | Minus |
| arm_2R | 5024457..5025104 | 17..664 | 99 | | Minus |
BO30152.pep Sequence
Translation from 16 to 1057
> BO30152.pep
MGNASSSVHMQRERHKSTDLSTPSSPAHFRDSIGGGGAGQGGSAGAAALG
AAAGAVGAAGGGGGGGGGQAFSFDKKHTAVLNEGSSQEDDDPYYTGTGTG
STRRGTAHDDATSAVTRDHSSMDNNEEEEEAAVGAEPATGSQLTGDEDDI
RKTALPTVLRWDGGGKNVTISGTFSDWKPMAMVRSHQNFVTIIDLPEGDH
QYKFCVDGEWKHDPKLKSVENAEGQRNNLVSVRESDFEVFQALAKDSENV
TNYAEKEYSQEVPQVKPWEKVSGPPVLPPHLLQVILNKDTPLSCEPTLLP
EPNHVMLNHLYALSIKDGVMVLSATHRYRKKYVTTLLYKPIASFLDH
BO30152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alc-PA | 341 | CG8057-PA | 1..341 | 1..341 | 1801 | 100 | Plus |
| alc-PB | 220 | CG8057-PB | 1..220 | 122..341 | 1170 | 100 | Plus |
