BO30161.complete Sequence
2650 bp assembled on 2011-10-14
GenBank Submission: KX797793
> BO30161.complete
GAAGTTATCAGTCGACATGGAGGAAGTTCTCGAGACGATGCAGCTGGAGA
ACATGCACTGCGATGTGTGCGAGGGTACCACCTTCCAGGAGCGCGAGGGA
TTCTACTACTGCGTAGAGTGTGGCACACAGAAGGATCAGATTCGTGCAGT
GGACATTACCGCCGAGGATAACTTTGATGACACGGCAGCAGGCCGATATA
CAGCCAGGACGATCCGACAGAAGAAGGATACGGAGAAGGAGGATGAGGAC
GATATCACCTCGTGGGAATTCTACAACTACGTGCTGCGCGGCTTCCTCCA
GGAGCTGCTCAACATGGGCGCCAAGCCGGAGCTCAAACTGATGACCCTGC
AAGTGTGGGCGGCTTACTTGGACAGCATGGAGGTGGCCTTCAGCAAGAGC
AACAAGACGGGACTGCCTAAACTGAATGTGCGGGCGCTGCCCATAGATGC
CCGCATCATCTACAACCATAAGACATTCAAGAAAGGCAAAAAGGGCAAGA
AGAGCACTCTAACGGGTGACCCAAATGACGAGCGCGCCAAGTTCAGATTG
TGGAACAGAACTAAGCGCAATCTAGACGCCTCCGGCTACCGCTCGCACGG
AGGAGCTTCAGAGTCCGAAGGGGAGCAGAGTCTCCACCTGCAATGGTCAA
TGCGTGCACGCAAGTCCTTGAAGCGCCATATGCCGCTGAAGCACCTGGAC
AAGCATAGCCGCGACAGCAAGGGTAGTATGTCGTGCCACAGCTTGAGACC
GAGGGTCAAGCAGCTCCACAATTTTGATCGTAACATCTACTGCCTGAATA
TTATCAAGTTGTATGTGGTGCTGGGCATAGCCCTTAATATGGTGGAGGAT
GATATACAGCTATCGGACTTGCTGCGCTTCATTGATGAGGAGCACTTGAC
CAAGCGGTGCATGCTTAACTATCTGCCCGGAAATGTGGCGGCCAAGGGCA
AGGCACTGCTCAAAGATATGGAGCTCAGCAAAATGAAAGACAAGGTTACC
AACAAGCTTCTGCGTGTAAACATCGCGTGTATGTCACGATTCATAAACTT
GTCTGAATATCAAAAACCGAACCTGCACTCCCTAGCGGAGCGATATATTC
TGGAGTTGGCACTGCCACCTCGGCTACTGAAGTACGTGAATAGCCTGCTT
GACCTGCATCCGCCCACTTTTTTTAACGCCATGACCGTACATCCGTATCC
GCGCTATGAGGCCAGGACTATGGCCTACATCCTCTACGCCATGAAGTTGC
TCTTCGGCTTGGACGATCTCAAGGAGCGGAATATATCTGAATCGGCCGCT
AAAATCAATGAAAAACTGCTGGAAGTCGGCGGAGATGAGGCTCCCTTGCT
TTTTGTTTTTACCGAGTGGATGGAGTTTGTGGAGATGAGGAAAGTGATTG
TCTCACATTACAACCAAAGTTTTGCCCGTCGCTTCGGGGTATCCACCCGG
ACTGGTTGTCAGGTGGACGACATACTGGCAAAGGAGTGGAAAGAGAAGGA
GCAAGGCGAAACCTTTGGCTGGATGCAGGGATCTGCGGCAATGAAGCGTC
AGCATGAAAACCTGACACACATTATTGAAACCATGCTGAAGGACCATTTT
GGCGAGTCCAGCAAAGAAAGTATGGAGAAGGAACACATTGAATTCCAGCC
CAGCTTGACTCCGGCTCACTCCTACTTCAACAGAATCCTACTCCAAGTAT
CGCGGTCTGATGGTGCAAAAATGAAAATCACAATTCCTGACCACATGAAA
GTGGATCACTCGGCCCGCAACCTGGATCCCTTTGTGCTGGAAACGACCGA
GCTGTCGCAGTATTTGTCCCAACATGGCCTTAAACTACGAGTAGAGGAGC
TTGCCTGCCAGGAGGACATCCAAAACGTGGGCATATTCCGCCCACTAACA
ATAATCCGAGGTGACGGTCGAGAATACCGCGCCAACACTGAAATTAAAAC
CGAGACGTGGATAAGCGAGCTAAAGCGTAAGGAGAAACGGCCGGACTTTC
GGTTCACACAGCCCACTGGAACCTATGGAGCCCGATATTTGAAACGTATA
ACAATGCGCGACGCAAGGCGTGTGCAACTTGAGATAAATAATCCGTTTTG
GGATGTTACCGAAACGCCCAGCTTTCTTCTCAAACTCAACGATAACGAGA
TACCACTTGACAGCCTTAGCTCACTGCAAACCTTCGAGGAAGGGACCATG
GATCCATTAAACATCCCTCTAGATCTGCCCCGTCGCAATCTGGAAAAAAT
TTTGAATCCGGAAGGTTCTGATAGAGCATCAGACCAAGTAGCGAGCGATA
TCAATGATGAGCCGCCAAGCCCTGAGACGCTGTTATTGCAAGTGTCAAAT
TTTGATTGCTGGCTTCTACACGGCTATATGAAAAGAATTCGGAGGCATGA
CAAGCATGAACTGCGTCAGTTGTTCCCCTGTTCCTTCCGTTGGCTCTTGG
AGACGTGTGCCAGCACAATAGGCATAGTCTGGGAGGAGCTCTACGAGGAA
CTGCTCATTGTGGAAGTGATGTACCATCACAGCATCAGGGACTGGAGCAA
TCATAGGAACTATCTGTGTATTCAACACAATACTCAAGAGAAGGACATCC
GAACCCTCGCCAGGACGTACAAGGAGTTATGGGCAAGCTTTCTAGACCAT
BO30161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1B-RC | 2619 | CG6241-PC | 1..2616 | 17..2632 | 13080 | 100 | Plus |
| TAF1B-RA | 2619 | CG6241-PA | 1..2616 | 17..2632 | 13080 | 100 | Plus |
| TAF1B-RB | 1986 | CG6241-PB | 1..1983 | 650..2632 | 9915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1B-RC | 3399 | CG6241-RC | 114..2729 | 17..2632 | 13080 | 100 | Plus |
| TAF1B-RA | 2941 | CG6241-RA | 114..2729 | 17..2632 | 13080 | 100 | Plus |
| TAF1B-RB | 3046 | CG6241-RB | 692..2834 | 490..2632 | 10715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10140773..10142400 | 2632..1005 | 8140 | 100 | Minus |
| 3R | 32079331 | 3R | 10142494..10142936 | 1006..564 | 2215 | 100 | Minus |
| 3R | 32079331 | 3R | 10143644..10144071 | 444..17 | 2140 | 100 | Minus |
| 3R | 32079331 | 3R | 10143468..10143588 | 565..445 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 10143363..10143438 | 565..490 | 380 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 6926..7020 | 1383..1294 | 120 | 64.6 | Minus |
BO30161.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:39 Download gff for
BO30161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6241-RA | 104..2719 | 17..2634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:31 Download gff for
BO30161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6241-RA | 114..2729 | 17..2634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:17 Download gff for
BO30161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TAF1B-RA | 114..2729 | 17..2634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:17 Download gff for
BO30161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10140771..10142398 | 1007..2634 | 99 | <- | Minus |
| 3R | 10142494..10142934 | 566..1006 | 100 | <- | Minus |
| 3R | 10143468..10143588 | 445..565 | 100 | <- | Minus |
| 3R | 10143644..10144071 | 17..444 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:31 Download gff for
BO30161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5966493..5968120 | 1007..2634 | 99 | <- | Minus |
| arm_3R | 5968216..5968656 | 566..1006 | 100 | <- | Minus |
| arm_3R | 5969190..5969310 | 445..565 | 100 | <- | Minus |
| arm_3R | 5969366..5969793 | 17..444 | 100 | | Minus |
BO30161.pep Sequence
Translation from 16 to 2650
> BO30161.pep
MEEVLETMQLENMHCDVCEGTTFQEREGFYYCVECGTQKDQIRAVDITAE
DNFDDTAAGRYTARTIRQKKDTEKEDEDDITSWEFYNYVLRGFLQELLNM
GAKPELKLMTLQVWAAYLDSMEVAFSKSNKTGLPKLNVRALPIDARIIYN
HKTFKKGKKGKKSTLTGDPNDERAKFRLWNRTKRNLDASGYRSHGGASES
EGEQSLHLQWSMRARKSLKRHMPLKHLDKHSRDSKGSMSCHSLRPRVKQL
HNFDRNIYCLNIIKLYVVLGIALNMVEDDIQLSDLLRFIDEEHLTKRCML
NYLPGNVAAKGKALLKDMELSKMKDKVTNKLLRVNIACMSRFINLSEYQK
PNLHSLAERYILELALPPRLLKYVNSLLDLHPPTFFNAMTVHPYPRYEAR
TMAYILYAMKLLFGLDDLKERNISESAAKINEKLLEVGGDEAPLLFVFTE
WMEFVEMRKVIVSHYNQSFARRFGVSTRTGCQVDDILAKEWKEKEQGETF
GWMQGSAAMKRQHENLTHIIETMLKDHFGESSKESMEKEHIEFQPSLTPA
HSYFNRILLQVSRSDGAKMKITIPDHMKVDHSARNLDPFVLETTELSQYL
SQHGLKLRVEELACQEDIQNVGIFRPLTIIRGDGREYRANTEIKTETWIS
ELKRKEKRPDFRFTQPTGTYGARYLKRITMRDARRVQLEINNPFWDVTET
PSFLLKLNDNEIPLDSLSSLQTFEEGTMDPLNIPLDLPRRNLEKILNPEG
SDRASDQVASDINDEPPSPETLLLQVSNFDCWLLHGYMKRIRRHDKHELR
QLFPCSFRWLLETCASTIGIVWEELYEELLIVEVMYHHSIRDWSNHRNYL
CIQHNTQEKDIRTLARTYKELWASFLDH
BO30161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAF1B-PC | 872 | CG6241-PC | 1..872 | 1..872 | 4596 | 100 | Plus |
| TAF1B-PA | 872 | CG6241-PA | 1..872 | 1..872 | 4596 | 100 | Plus |
| TAF1B-PB | 661 | CG6241-PB | 1..661 | 212..872 | 3476 | 100 | Plus |
