BO30166.complete Sequence
3151 bp assembled on 2011-10-20
GenBank Submission: KX794509
> BO30166.complete
GAAGTTATCAGTCGACATGAAGTATTCAACAAGTCGAATAAACATTCTGT
GCCTGCTGGGATTGTGCCTACTGCTTTTTAAAACAGCACCCACAGAGGCA
CAAAACAAACGAACCTCGCGCGTAACCAGCTCCCGCAGCTTCGGGACCAA
CATCAAGACCGACACTTCCAATGGCCCTAGCTTCGACTGCCCTGAGGAGT
TCGGATACTATCCGCACCCATCGGATTGCACCCAATACTACGTGTGCGTC
TTTGGAGGAGCGCTGCTTGAAAGTTGCACTGGCGGCTTGATGTACTCGCA
CGACCTGCAGACCTGCGACTGGCCGCGAAACGTCGGCTGCGAGTTGGCGG
ACACATCCTCCGAGCGCAACCTTGCACAAAGCCAGGTCCAGAGGCAAAGA
GAACCCCATGCACAGCACGTGCCAAGCCGAGTACGTTTTGGAGCCGCTTT
CAGCAGTCAGGGTGGCACACAGAAGACGGCCACAGTGCCGCCACAGTACC
ATCGTTCTCCACCACAGGTAATACAGGCGCAGGTGCAGAATATACCTCCT
CCCCCACCGGAGCTGCGAGTGTCACCAAACCCGGTAATCACGTCGCGTGG
TCAACCAAAACCGCTGATCGACTCCCAGGAGGACATTGCAAAGCTGTATG
CTGATGCGCAGGAATCATTGCCGCCTGTGGAAGAAGAGGAGTCCGACCGT
CAGCAGAGAGTGTATCGAGGCCAACCCAGTACCGTTAGTCAAGTTCAACG
CGATCGCGATGGTATTATTCACCAAGCTAGTATTAATTCTATTCCTCAAA
CTGGAAAAATCGGATCTTACGCTTTTGGAACCGCCTATAGAGTTGAGTCG
CCTTCACCGTCATCGCTAGGGACACCGCAACCCGCTAATATATTTGTACA
GCCCACGTCAGCAGCCCCGCCGCAACAGTCAGAGCCCAATCGTAACTACT
ACAATGCATCTACATTTAATCATGGGGGCAGCTACCAACCACAGCAGCAA
AACCAACAACAACAGCCACAACCAACACCATTCCAACAAGCGCAACCACA
AGAACAACATCAGCAGCAGGCACAAGCCCCAACACATTCATATGACACAT
CCTATTATTCGGTTTACGACGACGATATCGATTTATATAGGGATATAGAG
TACCATCAGCAACAGTCACAGGAGCAGCAGAAAACACCTACGCCGCAGTA
TCAGTCGGCAGTGCGCCAACAGCAGGCCCACCCAACCTACCGCCCCTTAG
AGCTTCCCGCCACTCCGAAGCCCCCCTCTTACGAAAACCAGCCAGCGTAC
AATACAGACTACGATGAGGATATTAATAGCCAGATTGAACAGGATAATGC
GTACGATCATCCAACACGTACTCCTCAAAGGGCAGAACATGTGGCCATAC
AAAAACTGGATACCCGAGCCAGCCACTCGAGCACACTCACTCTAACAACG
CCAGCATCTCAACCGGAAGTACTCACATACTACGAAACGCTGACCACAGC
CTATGCTCCGAAGGGCGGGTCTAGCGACTACGGCTATGGGTCGATAGAAG
ACTATGACCAGAGGGACCGTTTACTAACCGAAGTCAAGTCAAGGCCCCAT
ACCGGTACGGAAGACTTTGACCTAATTGCCAATGTTGTGGGCCATACCGA
CAAGACCACCGGAACTCCACCAACACGATCGCAAAAAACGAAATCGACGC
CGCCACATAACGGAAGCCATGCAAGGAGTTCCAACACCACAACACATGCT
GTTACGTTTACAAAGTCCTCAACAATAACAACCACATCCACATTTCCTCC
AACGACAACAACAAAACTTGCAAGAAACAACAACAGGAACCGGGGCAGTG
CCATGTACAGTAATCAGGATCGAGACGTGATATCCACGCCCAACCGCGGA
ACTCATCCTCCACGAACGCGGCCAACACTTAAGCCATCGGGAACAATTGT
ATCAAAGGCTCAAGAGTTTGTGGATATATACCGTTACCCACCGTCCCGCC
CTGACCCTATTTACCCACAGCCTATGCCAGATAAAACGGCAGCCAAATGC
CGAAAGGACGTATGCCTTTTGCCTGACTGCTATTGCGGAGGAAGAGATAT
TCCTGGCGAGCTACCTGTTGAAAGCATCCCTCAGATCGTTCTCTTGACCT
TTGACGATTCCGTTAATGACCTAAACAAGCAGTTGTACACGGATCTTTTT
GAAAAAGGTCGCGTCAATCCAAACGGCTGTCCCATCACAGCCACTTTTTA
CGTTTCCCACGAGTGGACTGACTACAGTCAAGTGCAGAATCTTTACGCCG
ATGGACATGAAATGGCTTCGCATACAGTTTCTCACAGCTTTGGCGAGCAG
TTCTCCCAGAAGAAGTGGACTCGTGAAATTGCCGGACAGCGTGAGATCCT
TGCTGCGTACGGCGGTGTCAAGATGTCGGATGTTCGAGGCATGCGTGCTC
CTTTCCTGTCGGTGGGCGGAAACAAAATGTACAAAATGCTGTACGACTCA
AACTTCACCTACGACTCTTCCATGCCTGTCTACGAAAACCGACCACCCTC
CTGGCCCTACACGCTTGACTACAAGATATTCCACGACTGCATGATTCCGC
CTTGCCCGACCCGTTCCTATCCTGGGGTGTGGCAGGTACCTATGGTCATG
TGGCAGGACCTTAACGGAGGCCGCTGTTCTATGGGCGATGCCTGTTCCAA
CCCTAGTGATGCAGATGGAGTGACAAAGATGATTATGAAGAACTTTGAAC
GTCATTACACTACAAACAGAGCACCATTTGGCTTGTTTTACCACGCTGCA
TGGTTTACCCAGCCCCATCACAAAGAGGGCTTTATTAAATTTCTTGATGC
CATCAATGCAATGCAAGATGTGTGGATAATAACCAACTGGCAAGCGCTTC
AATGGGTGCGAGACCCTACACCGATATCACGCATAAACTCATTCCAACCA
TTTCAGTGCGATTATTCGGATCGGCCCAAACGCTGCAACAACCCAAAAGT
GTGTAATTTGTGGCACAAGTCCGGCGTCCGGTACATGAAAACGTGTCAAC
CATGCCCCGACATTTACCCCTGGACTGGAAAATCTGGAATTCGATCTTCC
CGAATCGATAATGAAGTTGAAGAGCCGGCAGCGGCAAGCTTTCTAGACCA
T
BO30166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda5-RA | 3120 | CG31973-PA | 1..3117 | 17..3133 | 15585 | 100 | Plus |
| Cda5-RJ | 5673 | CG31973-PJ | 3376..5670 | 839..3133 | 11475 | 100 | Plus |
| Cda5-RE | 3123 | CG31973-PE | 1..2092 | 17..2108 | 10460 | 100 | Plus |
| Cda5-RJ | 5673 | CG31973-PJ | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda5-RA | 4350 | CG31973-RA | 112..3228 | 17..3133 | 15585 | 100 | Plus |
| Cda5-RJ | 7005 | CG31973-RJ | 3589..5883 | 839..3133 | 11475 | 100 | Plus |
| Cda5-RE | 4347 | CG31973-RE | 106..2197 | 17..2108 | 10460 | 100 | Plus |
| Cda5-RJ | 7005 | CG31973-RJ | 214..1037 | 17..840 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 39301..39859 | 643..85 | 2795 | 100 | Minus |
| 2L | 23513712 | 2L | 34720..35214 | 1333..839 | 2475 | 100 | Minus |
| 2L | 23513712 | 2L | 33845..34290 | 1824..1379 | 2230 | 100 | Minus |
| 2L | 23513712 | 2L | 27053..27490 | 2769..2332 | 2190 | 100 | Minus |
| 2L | 23513712 | 2L | 28015..28241 | 2331..2105 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 26765..26966 | 2969..2768 | 1010 | 100 | Minus |
| 2L | 23513712 | 2L | 38535..38733 | 840..642 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 28732..28926 | 2106..1912 | 975 | 100 | Minus |
| 2L | 23513712 | 2L | 26524..26689 | 3133..2968 | 830 | 100 | Minus |
| 2L | 23513712 | 2L | 28982..29070 | 1911..1823 | 445 | 100 | Minus |
| 2L | 23513712 | 2L | 58081..58150 | 86..17 | 350 | 100 | Minus |
| 2L | 23513712 | 2L | 34557..34606 | 1381..1332 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:22:26 has no hits.
BO30166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-20 16:22:43 Download gff for
BO30166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RA | 86..3202 | 17..3135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:53 Download gff for
BO30166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RA | 112..3228 | 17..3135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:05 Download gff for
BO30166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda5-RA | 112..3228 | 17..3135 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:05 Download gff for
BO30166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 26522..26688 | 2969..3135 | 98 | <- | Minus |
| 2L | 26766..26964 | 2770..2968 | 100 | <- | Minus |
| 2L | 27053..27490 | 2332..2769 | 100 | <- | Minus |
| 2L | 28015..28240 | 2106..2331 | 100 | <- | Minus |
| 2L | 28733..28926 | 1912..2105 | 100 | <- | Minus |
| 2L | 28982..29068 | 1825..1911 | 100 | <- | Minus |
| 2L | 33845..34288 | 1381..1824 | 100 | <- | Minus |
| 2L | 34558..34604 | 1334..1380 | 100 | <- | Minus |
| 2L | 34720..35212 | 841..1333 | 100 | <- | Minus |
| 2L | 38535..38731 | 644..840 | 100 | <- | Minus |
| 2L | 39301..39857 | 87..643 | 100 | <- | Minus |
| 2L | 58081..58150 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:53 Download gff for
BO30166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 27053..27490 | 2332..2769 | 100 | <- | Minus |
| arm_2L | 26522..26688 | 2969..3135 | 98 | <- | Minus |
| arm_2L | 26766..26964 | 2770..2968 | 100 | <- | Minus |
| arm_2L | 58081..58150 | 17..86 | 100 | | Minus |
| arm_2L | 28015..28240 | 2106..2331 | 100 | <- | Minus |
| arm_2L | 28733..28926 | 1912..2105 | 100 | <- | Minus |
| arm_2L | 28982..29068 | 1825..1911 | 100 | <- | Minus |
| arm_2L | 33845..34288 | 1381..1824 | 100 | <- | Minus |
| arm_2L | 34558..34604 | 1334..1380 | 100 | <- | Minus |
| arm_2L | 34720..35212 | 841..1333 | 100 | <- | Minus |
| arm_2L | 38535..38731 | 644..840 | 100 | <- | Minus |
| arm_2L | 39301..39857 | 87..643 | 100 | <- | Minus |
BO30166.pep Sequence
Translation from 16 to 3151
> BO30166.pep
MKYSTSRINILCLLGLCLLLFKTAPTEAQNKRTSRVTSSRSFGTNIKTDT
SNGPSFDCPEEFGYYPHPSDCTQYYVCVFGGALLESCTGGLMYSHDLQTC
DWPRNVGCELADTSSERNLAQSQVQRQREPHAQHVPSRVRFGAAFSSQGG
TQKTATVPPQYHRSPPQVIQAQVQNIPPPPPELRVSPNPVITSRGQPKPL
IDSQEDIAKLYADAQESLPPVEEEESDRQQRVYRGQPSTVSQVQRDRDGI
IHQASINSIPQTGKIGSYAFGTAYRVESPSPSSLGTPQPANIFVQPTSAA
PPQQSEPNRNYYNASTFNHGGSYQPQQQNQQQQPQPTPFQQAQPQEQHQQ
QAQAPTHSYDTSYYSVYDDDIDLYRDIEYHQQQSQEQQKTPTPQYQSAVR
QQQAHPTYRPLELPATPKPPSYENQPAYNTDYDEDINSQIEQDNAYDHPT
RTPQRAEHVAIQKLDTRASHSSTLTLTTPASQPEVLTYYETLTTAYAPKG
GSSDYGYGSIEDYDQRDRLLTEVKSRPHTGTEDFDLIANVVGHTDKTTGT
PPTRSQKTKSTPPHNGSHARSSNTTTHAVTFTKSSTITTTSTFPPTTTTK
LARNNNRNRGSAMYSNQDRDVISTPNRGTHPPRTRPTLKPSGTIVSKAQE
FVDIYRYPPSRPDPIYPQPMPDKTAAKCRKDVCLLPDCYCGGRDIPGELP
VESIPQIVLLTFDDSVNDLNKQLYTDLFEKGRVNPNGCPITATFYVSHEW
TDYSQVQNLYADGHEMASHTVSHSFGEQFSQKKWTREIAGQREILAAYGG
VKMSDVRGMRAPFLSVGGNKMYKMLYDSNFTYDSSMPVYENRPPSWPYTL
DYKIFHDCMIPPCPTRSYPGVWQVPMVMWQDLNGGRCSMGDACSNPSDAD
GVTKMIMKNFERHYTTNRAPFGLFYHAAWFTQPHHKEGFIKFLDAINAMQ
DVWIITNWQALQWVRDPTPISRINSFQPFQCDYSDRPKRCNNPKVCNLWH
KSGVRYMKTCQPCPDIYPWTGKSGIRSSRIDNEVEEPAAASFLDH
BO30166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda5-PA | 1039 | CG31973-PA | 1..1039 | 1..1039 | 5655 | 100 | Plus |
| Cda5-PE | 1040 | CG31973-PE | 1..1040 | 1..1039 | 5498 | 97.2 | Plus |
| Cda5-PJ | 1890 | CG31973-PJ | 1072..1890 | 234..1039 | 4205 | 95.2 | Plus |
| Cda5-PG | 1790 | CG31973-PG | 1025..1790 | 277..1039 | 3669 | 89 | Plus |
| Cda5-PB | 1998 | CG31973-PB | 1..629 | 1..643 | 3213 | 94.9 | Plus |
| Cda5-PJ | 1890 | CG31973-PJ | 1..274 | 1..274 | 1455 | 100 | Plus |
| Cda5-PG | 1790 | CG31973-PG | 1..274 | 1..274 | 1455 | 100 | Plus |
