BO30167.complete Sequence
1003 bp assembled on 2011-09-12
GenBank Submission: KX797256
> BO30167.complete
GAAGTTATCAGTCGACATGTGGACAACGGACTGCCCGAGAGCGTTGAAAG
CGATTTGCTTGGTGCCGCTGTGGCTGCTCCTCTTCCTCGATTGCGGCATG
GTCGGTGGCGAGGTGCCGCCGCATTACTGGGAAACCCCGTACTCGCAGCC
GTACTTCGACAACTCCTCGAGGCGTGAGGTCACCGCAACCGTCGGCCAGG
CGGCCCTGCTGCACTGCCGCGTCCGGAATCTGGGCGATCGAGCGGTGTCC
TGGATAAGGAAGCGCGACCTGCACATCCTGACGGTGGGAATACTAACGTA
CACAAACGACCAGCGCTTCCAGTCGCTGCACTCCGAGGGATCCGACGAGT
GGACGCTGCGCATCTCATCGCCGCAGCCGCGGGATTCGGGCACCTACGAG
TGCCAGGTGTCCACGGAGCCGAAGATCAGCCAAGGATTTCGCCTCAACGT
TGTGGTGTCACGGGCCAAGATCCTGGGCAACGCGGAGCTCTTCATCAAGA
GCGGCAGCGACATCAATCTCACCTGCCTGGCGATGCAGTCGCCGGTGCCG
CCATCGTTCATCTACTGGTACAAGGGCAAGCGGGTCATGAATTACTCGCA
GCGCGGTGGCATCAACGTCATCACGGAGCGTTCCACACGGACCAGCAAGC
TGCTCATAGCCAAGGCCACGCCGGCGGATTCGGGCAACTACACGTGCTCC
CCGAGCAGCTCAGATTCTGCCTCCGTGGTGGTGCACGTCATCAACGGGGA
ACATCCGGCCGCCATGCAGCACGGCAACAGCAGCGCCACCTGCCTGCGCC
CCCTTTCATCCACGTCCGTGCCTTTCGTCCTTGCCACCTGGATGTCGATG
ACGGTGGCGTCTGTCGCCTGGAACTCTAACCTCAACATCAACTGGAACTG
GAGCCCCGACTGGCGCTGGCACTGGAACCCTAAATGGAATTGGAGCAACC
TGGCCGCCGGTCTAGTGGGCATCTGGAGCTGGAGCGCAAGCTTTCTAGAC
CAT
BO30167.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr4-RB | 972 | CG33512-PB | 1..969 | 17..985 | 4845 | 100 | Plus |
| dpr5-RB | 897 | CG5308-PB | 217..531 | 212..526 | 330 | 73.7 | Plus |
| dpr5-RA | 1011 | CG5308-PA | 331..645 | 212..526 | 330 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr4-RB | 2994 | CG33512-RB | 1004..1974 | 15..985 | 4855 | 100 | Plus |
| dpr5-RB | 1419 | CG5308-RB | 302..616 | 212..526 | 330 | 73.7 | Plus |
| dpr5-RA | 1817 | CG5308-RA | 700..1014 | 212..526 | 330 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11534503..11534777 | 985..711 | 1375 | 100 | Minus |
| 3R | 32079331 | 3R | 11535583..11535841 | 713..455 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 11535969..11536180 | 455..244 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 11539099..11539256 | 246..89 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 11539907..11539981 | 89..15 | 375 | 100 | Minus |
| 3R | 32079331 | 3R | 11503537..11503754 | 212..429 | 310 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:36:34 has no hits.
BO30167.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:54 Download gff for
BO30167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr4-RB | 1006..1974 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:12 Download gff for
BO30167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr4-RB | 1006..1974 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:33 Download gff for
BO30167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr4-RB | 1006..1974 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:33 Download gff for
BO30167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11534500..11534774 | 714..987 | 99 | <- | Minus |
| 3R | 11535583..11535840 | 456..713 | 100 | <- | Minus |
| 3R | 11535969..11536179 | 245..455 | 100 | <- | Minus |
| 3R | 11539101..11539255 | 90..244 | 100 | <- | Minus |
| 3R | 11539907..11539979 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:12 Download gff for
BO30167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7360222..7360496 | 714..987 | 99 | <- | Minus |
| arm_3R | 7361305..7361562 | 456..713 | 100 | <- | Minus |
| arm_3R | 7361691..7361901 | 245..455 | 100 | <- | Minus |
| arm_3R | 7364823..7364977 | 90..244 | 100 | <- | Minus |
| arm_3R | 7365629..7365701 | 17..89 | 100 | | Minus |
BO30167.pep Sequence
Translation from 16 to 1003
> BO30167.pep
MWTTDCPRALKAICLVPLWLLLFLDCGMVGGEVPPHYWETPYSQPYFDNS
SRREVTATVGQAALLHCRVRNLGDRAVSWIRKRDLHILTVGILTYTNDQR
FQSLHSEGSDEWTLRISSPQPRDSGTYECQVSTEPKISQGFRLNVVVSRA
KILGNAELFIKSGSDINLTCLAMQSPVPPSFIYWYKGKRVMNYSQRGGIN
VITERSTRTSKLLIAKATPADSGNYTCSPSSSDSASVVVHVINGEHPAAM
QHGNSSATCLRPLSSTSVPFVLATWMSMTVASVAWNSNLNINWNWSPDWR
WHWNPKWNWSNLAAGLVGIWSWSASFLDH
BO30167.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr4-PB | 323 | CG33512-PB | 1..323 | 1..323 | 1758 | 100 | Plus |
| dpr5-PB | 298 | CG5308-PB | 52..286 | 45..279 | 670 | 56.2 | Plus |
| dpr5-PA | 336 | CG5308-PA | 90..324 | 45..279 | 670 | 56.2 | Plus |
| dpr6-PC | 390 | CG14162-PC | 65..285 | 37..255 | 631 | 56.1 | Plus |
| dpr6-PF | 396 | CG14162-PF | 65..291 | 37..255 | 614 | 54.6 | Plus |
