Clone BO30168 Report

Search the DGRC for BO30168

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:301
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptdnt-RA
Protein status:BO30168.pep: Imported from assembly
Sequenced Size:1786

Clone Sequence Records

BO30168.complete Sequence

1786 bp assembled on 2011-10-14

GenBank Submission: KX796718

> BO30168.complete
GAAGTTATCAGTCGACATGGAATCTGTGAATAAATGCGGTAAAAGCGCAT
CCACAAGAAATTGTACGGTGAAAATGAGCCGGAAAATGTGGGTGCTTTCG
CTGCTGGCGCTGGCAGCGCTACAACTGCACTCGGGCAGCGAAGTGGCTGC
ACATTTGAATGTTTTCCTAAATCCCGTGGAAGTAATGCGTTTATTAGGCG
TCTCTGCTGAGGTTTACTACGTTCGCGAAGGTCATATAAATAACTACGCT
TTGAACTTCATTGTACCAGTTCCGGCGAATGTCAAGGACATTAGTTTCAC
CTGGCAGTCGCTGGCGGGGCGTGGCCTTCCCTACAGCATCAATGTGGTCA
GCTCCGATCAGGAAGTGCTTCCTCGACCGGCGATCAATGTGTCACACAGT
GGGGAAATCCCCACGACCATACAAACCTGGTCCATTGCCCTCAAGTGCAG
CGGATTGAAAGCGGCGGAGGTGGATGTGACTGTCAGCCTGGAAGTGGTGC
TCAACCGGTCACTGAACAATGTAACTCATCTGGTGTTTCGGAGGAAGAAG
ATCTGTCTTATGAATGACAGTGCCGAGGATTTGTCGGAGGATGTGGACGA
TCCCCAGTTGCTGGAGACCGTAATGTTACCACCCACTGGATTGATCACCC
TGGTCGTTGGTGTTTCTGTGGCCATGGGATCTGTGTGCCTGCTCCTCATG
ATTGCCTATTGCGTCAAGGGAGCAGCCAACAAGAGGCAGCATCATCAACA
CGGAGGACAGCCCATGAGGACTTCGAGCTTTCAGAGACTAAATACCCATC
CGCCCTGCCAGTCTTCCATGGGATCGGCTGCTTATATGACGCCTTCGATT
ATAGCTCCAATTCATGGCTCCTCCTTGCCACGGAAAGTTCCAGTTTCCGT
AGAGCAGCAACATCCGGAGGAGCTTCATCGCCGAATTTCCGAGTTGACCG
TGGAGCGCTGCAGGGTACGACTATCGAGTCTCCTGCAGGAAGGAACGTTT
GGACGAGTTTATCGTGGCACCTACAACGACACTCAGGATGTTCTGGTCAA
AACGGTGGCCCAGCATGCTAGCCAAATGCAGGTGCTTCTCCTTCTCCAGG
AAGGAATGCTGCTCTATGGCGCCTCTCACCCTGGAATTCTCTCGGTTCTC
GGCGTTTCCATTGAGGATCACACCACACCGTTTGTCCTCTATCCCGCTCT
GAACAATACCCGCAACTTAAAGCAATTCCTGCTGGATCCAGCTTGTGCTC
GCACTGTGACCACCATCCAAATTGTGATGATGGCCTCGCAACTGTCCATG
GCATTGGATCATCTGCACAGCCATGGAGTGGTGCATAAGGATATTGCCAC
AAGGAACTGCGTTATTGACGATCAGCTGAGGGTGAAGCTCTCCGATAGCT
CCCTGTCCCGCGATCTCTTCCCCTCGGACTACAACTGCCTGGGGGACAGC
GAAAACAGGCCAGTTAAGTGGATGTCCCTGGAGGCACTGCAGCACAAACA
GTTCTCCGAGGCCAGCGATTCGTGGGCCTTCGGAGTTCTGATGTGGGAGT
TGTGCACCTCCGCTAAGCAACCCTACGCCGAGGTGGATCCTTTCGAGATG
GAGCACTATCTCAAGGACGGGTATCGTCTGGCCCAGCCCTTCAACTGCCC
CGATGAGCTGTTTACGATCATGGCCTATTGTTGGGCCCTGTTACCTGCCG
AGCGGCCGACCTTCGCCCAGCTGCAGTCTTGTCTCTCCGAATTCTATTCA
CAAATCACGCGCTATGTCGCAAGCTTTCTAGACCAT

BO30168.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
dnt-RB 1755 CG17559-PB 1..1752 17..1768 8760 100 Plus
dnt-RA 1755 CG17559-PA 1..1752 17..1768 8760 100 Plus
drl-RB 1938 CG17348-PB 1048..1749 986..1687 675 73.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
dnt-RB 2639 CG17559-RB 389..2140 17..1768 8760 100 Plus
dnt-RA 2630 CG17559-RA 389..2140 17..1768 8760 100 Plus
drl-RB 3104 CG17348-RB 1435..2136 986..1687 675 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19339770..19340936 1362..196 5835 100 Minus
2L 23513712 2L 19339353..19339651 1661..1363 1495 100 Minus
2L 23513712 2L 19362658..19362839 198..17 910 100 Minus
2L 23513712 2L 19339168..19339276 1768..1660 545 100 Minus
2L 23513712 2L 19207205..19207503 1363..1661 400 75.6 Plus
Blast to na_te.dros performed on 2014-11-26 16:47:25 has no hits.

BO30168.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:40 Download gff for BO30168.complete
Subject Subject Range Query Range Percent Splice Strand
dnt-RA 386..2137 17..1770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:46 Download gff for BO30168.complete
Subject Subject Range Query Range Percent Splice Strand
dnt-RA 389..2140 17..1770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:32 Download gff for BO30168.complete
Subject Subject Range Query Range Percent Splice Strand
dnt-RA 389..2140 17..1770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:32 Download gff for BO30168.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19339166..19339276 1660..1770 98 <- Minus
2L 19339355..19339651 1363..1659 100 <- Minus
2L 19339770..19340934 198..1362 100 <- Minus
2L 19362659..19362839 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:46 Download gff for BO30168.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19339355..19339651 1363..1659 100 <- Minus
arm_2L 19362659..19362839 17..197 100   Minus
arm_2L 19339166..19339276 1660..1770 98 <- Minus
arm_2L 19339770..19340934 198..1362 100 <- Minus

BO30168.pep Sequence

Translation from 16 to 1786

> BO30168.pep
MESVNKCGKSASTRNCTVKMSRKMWVLSLLALAALQLHSGSEVAAHLNVF
LNPVEVMRLLGVSAEVYYVREGHINNYALNFIVPVPANVKDISFTWQSLA
GRGLPYSINVVSSDQEVLPRPAINVSHSGEIPTTIQTWSIALKCSGLKAA
EVDVTVSLEVVLNRSLNNVTHLVFRRKKICLMNDSAEDLSEDVDDPQLLE
TVMLPPTGLITLVVGVSVAMGSVCLLLMIAYCVKGAANKRQHHQHGGQPM
RTSSFQRLNTHPPCQSSMGSAAYMTPSIIAPIHGSSLPRKVPVSVEQQHP
EELHRRISELTVERCRVRLSSLLQEGTFGRVYRGTYNDTQDVLVKTVAQH
ASQMQVLLLLQEGMLLYGASHPGILSVLGVSIEDHTTPFVLYPALNNTRN
LKQFLLDPACARTVTTIQIVMMASQLSMALDHLHSHGVVHKDIATRNCVI
DDQLRVKLSDSSLSRDLFPSDYNCLGDSENRPVKWMSLEALQHKQFSEAS
DSWAFGVLMWELCTSAKQPYAEVDPFEMEHYLKDGYRLAQPFNCPDELFT
IMAYCWALLPAERPTFAQLQSCLSEFYSQITRYVASFLDH

BO30168.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
dnt-PB 584 CG17559-PB 1..584 1..584 3025 100 Plus
dnt-PA 584 CG17559-PA 1..584 1..584 3025 100 Plus
drl-PA 610 CG17348-PA 229..610 195..584 1336 65.1 Plus
drl-PB 645 CG17348-PB 229..610 195..584 1336 65.1 Plus
Drl-2-PC 648 CG3915-PC 362..648 299..584 639 45.8 Plus
drl-PA 610 CG17348-PA 20..177 45..201 513 62.3 Plus
drl-PB 645 CG17348-PB 20..177 45..201 513 62.3 Plus