BO30171.complete Sequence
958 bp assembled on 2011-09-12
GenBank Submission: KX793829
> BO30171.complete
GAAGTTATCAGTCGACATGTGCTGGGTCGCAATGGCGCGCAAGGACGATC
CCGTTTTCAATGTGCGGTTCGTGCAGTTCGTGGAGAATCAGCCGTGCCTG
TGGAACTACACGCATCCGGGCTACAGCAAGAAGGAGGATGTGCAGAGGGC
GTGGCAGCAGGTTGCCAACGATATCAAGGACACGGTTCGCAACTGTCGCG
AGCGATGGCGCACCATAAGGAGCAGCTTCCTGCGATCCCTGAAGCTGGCA
CGCACACAAACGGGACGCGGCAAGCGCAAATACTACCTATCGAAGTATCT
TCAGTTTCTCGTTCCGTTCACCAAGTCGCGATCCTGCCACAAGCAGCTGC
CGGGCATGGTGCTCCGCAAACCCGGCCAAGCTGCCACTGCTCAGCAGGAA
GATGAGGTGGTGGCGGCGGAGGAGGAGGCCAAGGTGAGCGATGGTGAGAT
GCCGCTGGACGTTCAGGTGTCCGAGGAGGAGCATCGTCGTAATCAGGAAC
AGGATCGGGAGCAACCCACCGCCTGTTTGCCGCTCCGCCTGCATTCCATC
AAAGTGGAGCACGATTCGTCAAATGCGAACCAGCAGCTGGAGCGGATGGT
GAGCCAGCAGTCGCTGGTCTCGGTGCCCGCCGCCGCGCTGGGCAATCACC
TGGGCTGGTCGGATCTGACGCAGTGGTTCAAGGGACATGGCAGCGGTCAT
CACAAGTTAACCACAACAACAACAACACCAACATCACCACCACCGCCGCC
GCAGCCGGCTACGTCAGCTCTAAGTGTTTTCACTGGCGGACCAGGAGGAG
GTGGCTCACAACCGGATGCCGACTACTCCTTTCTGATCAGCCTGCATCCG
TACATCAAGGAGATGAACGGCAAGCAGAATCGAAAGTTTCGACAGAAGGT
CGTCGGACTCATCGACGATATTCTGGATAACAAGGATGTCGCAAGCTTTC
TAGACCAT
BO30171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4404-RA | 927 | CG4404-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4404-RA | 1696 | CG4404-RA | 237..1161 | 16..940 | 4625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12904280..12905035 | 940..185 | 3780 | 100 | Minus |
| X | 23542271 | X | 12905613..12905782 | 185..16 | 850 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3548..3624 | 663..738 | 131 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2421 | 690..744 | 116 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1575 | 714..768 | 112 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2418 | 691..744 | 111 | 74.5 | Plus |
BO30171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:53 Download gff for
BO30171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4404-RA | 255..1178 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:02 Download gff for
BO30171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4404-RA | 238..1161 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:23 Download gff for
BO30171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4404-RA | 238..1161 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:23 Download gff for
BO30171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12904278..12905034 | 186..942 | 99 | <- | Minus |
| X | 12905613..12905781 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:02 Download gff for
BO30171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12798311..12799067 | 186..942 | 99 | <- | Minus |
| arm_X | 12799646..12799814 | 17..185 | 100 | | Minus |
BO30171.pep Sequence
Translation from 16 to 958
> BO30171.pep
MCWVAMARKDDPVFNVRFVQFVENQPCLWNYTHPGYSKKEDVQRAWQQVA
NDIKDTVRNCRERWRTIRSSFLRSLKLARTQTGRGKRKYYLSKYLQFLVP
FTKSRSCHKQLPGMVLRKPGQAATAQQEDEVVAAEEEAKVSDGEMPLDVQ
VSEEEHRRNQEQDREQPTACLPLRLHSIKVEHDSSNANQQLERMVSQQSL
VSVPAAALGNHLGWSDLTQWFKGHGSGHHKLTTTTTTPTSPPPPPQPATS
ALSVFTGGPGGGGSQPDADYSFLISLHPYIKEMNGKQNRKFRQKVVGLID
DILDNKDVASFLDH
BO30171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4404-PA | 308 | CG4404-PA | 1..308 | 1..308 | 1642 | 100 | Plus |
| CG3838-PB | 435 | CG3838-PB | 54..391 | 11..303 | 201 | 23.5 | Plus |
| CG3838-PA | 435 | CG3838-PA | 54..391 | 11..303 | 201 | 23.5 | Plus |
| CG3919-PC | 318 | CG3919-PC | 18..269 | 15..310 | 186 | 22.6 | Plus |
| CG3919-PB | 302 | CG3919-PB | 18..96 | 15..98 | 178 | 38.1 | Plus |
