Clone BO30174 Report

Search the DGRC for BO30174

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:301
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptMED8-RA
Protein status:BO30174.pep: Imported from assembly
Sequenced Size:790

Clone Sequence Records

BO30174.complete Sequence

790 bp assembled on 2011-09-12

GenBank Submission: KX795907

> BO30174.complete
GAAGTTATCAGTCGACATGCAGCGCGACGAAAAGCTTTTTGAGCTGACGC
TGGATACGGTCCTTCAGCGTCTGAACGACCTGAAGCTGGCGGTTCTCTCG
ATGATCCAAAAACTTGAGCTAGAGTACGAGACCATCAACTGGCCGACTTT
CCTGGACAACTTTGCCATTATCTCAAGTCACTTGACGGGATTGACGAAAA
TCTTGGCAAAGGAGCAGTGTCCGCCGCTAAGAAATCGAACGGTCCTGCCC
CTTCTGGTCTCCATGGACCGGGATGACACCCTCATCAACATCACAGAGGG
TCGGGTGCCAGTCTTTTCACACGACATTGTTCCAGACTATTTGAGAACTC
GGCCGGATCCGATTACGGAACAGAAAATGCTGCAGAACGAACAGAAGGCG
GCGAACCTCACCAACGACGCTGCCATGAAACAGGTCACTCAATACAACAA
GGTCGTCTCCCACGTCCTGGATATGGTCAGCAAAGCGCGCGAGGAGTGGG
AAATCGAGAGCTCTTCGCGCACCGGCATCCAGCAGACGAGTAGCATGGCC
GACACACAGCTCCTGGTGGCCGCCGTGGGTATGGGAAAAGGACTCAAGCT
GACCAACTATGGACCCGGACCTGGCATGATGGTACCGCCTTCAATTCGAG
CACCCTCGCCAATGGGTGGACCCGCTATGAGTCCCGGCAACGTGCAGCAG
CAGCTGGGAAAGGCGCCATCGGCTGTGAAAACAAACATCAAGTCCGCAAA
TCAAGTGCATCCGTTCTCTCGAGCAAGCTTTCTAGACCAT

BO30174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
MED8-RA 759 CG13867-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
MED8-RA 963 CG13867-RA 85..840 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20325967..20326722 772..17 3780 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:06:09 has no hits.

BO30174.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:32 Download gff for BO30174.complete
Subject Subject Range Query Range Percent Splice Strand
MED8-RA 85..840 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:14 Download gff for BO30174.complete
Subject Subject Range Query Range Percent Splice Strand
MED8-RA 85..840 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:00 Download gff for BO30174.complete
Subject Subject Range Query Range Percent Splice Strand
MED8-RA 85..840 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:00 Download gff for BO30174.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20325965..20326722 17..774 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:14 Download gff for BO30174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16213470..16214227 17..774 99   Minus

BO30174.pep Sequence

Translation from 16 to 790

> BO30174.pep
MQRDEKLFELTLDTVLQRLNDLKLAVLSMIQKLELEYETINWPTFLDNFA
IISSHLTGLTKILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVF
SHDIVPDYLRTRPDPITEQKMLQNEQKAANLTNDAAMKQVTQYNKVVSHV
LDMVSKAREEWEIESSSRTGIQQTSSMADTQLLVAAVGMGKGLKLTNYGP
GPGMMVPPSIRAPSPMGGPAMSPGNVQQQLGKAPSAVKTNIKSANQVHPF
SRASFLDH

BO30174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
MED8-PA 252 CG13867-PA 1..252 1..252 1283 100 Plus