BO30179.complete Sequence
652 bp assembled on 2011-09-12
GenBank Submission: KX799575
> BO30179.complete
GAAGTTATCAGTCGACATGTCATGGAGATATGCGTCGCCCAGCCGCTTGG
AGACCTCCGAACAGACCACAGGCCGCCAGCTGCAGCGAGTCCTGCACTAC
TCGATGGCTCCTAGCCGGGCTCTTCCAGGACTAAGACGCGCCGAGTGCGC
CATCCATGACGTTGACTGTGATGAGGTCTATCCGGGCATCTACATTGGTG
ATGCTGCGGCGGCCAAAAACAAAACGTATCTGAGATTGATGGGCATCACC
CACGTTCTGAACGCGGCCGAGGGATGTCGGTATGGTCAGGTGGACACTGG
ACACAGCTACTACCGGGATATGCCCAGCATCAGGTACATGGGCTTCCCCA
TGGTCGATGCCCCAACGACAGACATCTCGCGCTACTTCTACGTGGCCTCC
AAGTTCATCGACAGCGCCATCAGCAGCGGCGGCAAGATCCTGGTCCACTG
CCTGGTGGGCATGTCGCGATCGGCCACCTGTGTGCTGGCCTACCTGATGA
TCTGCCGGAAGATGTCGGCGGTGGACGCGATACGCACGGTGCGGATGAGG
CGCGATATCCGGCCGAATGATGGATTCCTGCAGCAACTGGCCGACTTGGA
CATGGAGCTCAAGCGCAAGAACCTGTATCCCTACGCAAGCTTTCTAGACC
AT
BO30179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7378-RA | 621 | CG7378-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
| CG7378-RB | 681 | CG7378-PB | 78..678 | 34..634 | 3005 | 100 | Plus |
| CG7378-RC | 708 | CG7378-PC | 403..705 | 332..634 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7378-RA | 1189 | CG7378-RA | 371..988 | 17..634 | 3090 | 100 | Plus |
| CG7378-RB | 2020 | CG7378-RB | 448..1048 | 34..634 | 3005 | 100 | Plus |
| CG7378-RC | 3832 | CG7378-RC | 773..1075 | 332..634 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18908883..18909086 | 431..634 | 1020 | 100 | Plus |
| X | 23542271 | X | 18907498..18907668 | 34..204 | 855 | 100 | Plus |
| X | 23542271 | X | 18907731..18907861 | 205..335 | 655 | 100 | Plus |
| X | 23542271 | X | 18908275..18908379 | 332..436 | 510 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:08:21 has no hits.
BO30179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:35 Download gff for
BO30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7378-RA | 371..988 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:31 Download gff for
BO30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7378-RA | 371..988 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:59 Download gff for
BO30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7378-RA | 371..988 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:59 Download gff for
BO30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18900943..18900960 | 17..34 | 100 | -> | Plus |
| X | 18907499..18907668 | 35..204 | 100 | -> | Plus |
| X | 18907731..18907859 | 205..333 | 100 | -> | Plus |
| X | 18908277..18908374 | 334..431 | 100 | -> | Plus |
| X | 18908884..18909086 | 432..636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:31 Download gff for
BO30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18794976..18794993 | 17..34 | 100 | -> | Plus |
| arm_X | 18801532..18801701 | 35..204 | 100 | -> | Plus |
| arm_X | 18801764..18801892 | 205..333 | 100 | -> | Plus |
| arm_X | 18802310..18802407 | 334..431 | 100 | -> | Plus |
| arm_X | 18802917..18803119 | 432..636 | 99 | | Plus |
BO30179.pep Sequence
Translation from 16 to 652
> BO30179.pep
MSWRYASPSRLETSEQTTGRQLQRVLHYSMAPSRALPGLRRAECAIHDVD
CDEVYPGIYIGDAAAAKNKTYLRLMGITHVLNAAEGCRYGQVDTGHSYYR
DMPSIRYMGFPMVDAPTTDISRYFYVASKFIDSAISSGGKILVHCLVGMS
RSATCVLAYLMICRKMSAVDAIRTVRMRRDIRPNDGFLQQLADLDMELKR
KNLYPYASFLDH
BO30179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7378-PA | 206 | CG7378-PA | 1..206 | 1..206 | 1080 | 100 | Plus |
| CG7378-PB | 226 | CG7378-PB | 25..226 | 5..206 | 1050 | 99.5 | Plus |
| CG7378-PC | 235 | CG7378-PC | 25..235 | 5..206 | 1030 | 95.3 | Plus |
| Mkp3-PA | 241 | CG14080-PA | 47..187 | 53..199 | 206 | 34.2 | Plus |
| Mkp3-PD | 411 | CG14080-PD | 217..357 | 53..199 | 206 | 34.2 | Plus |
