BO30184.complete Sequence
2131 bp assembled on 2011-10-14
GenBank Submission: KX793933
> BO30184.complete
GAAGTTATCAGTCGACATGGTTAACATAGTCGGAGTAGTTTTCCTCTGCG
GTCTTGGCCTCATCAGTGCCGGACGCTTGAATGACGAGGATGTTCTGTCA
GATTTGCAACGCGTCAGCCAACTCAAAGGACTTGCCCTTGATTTTGTTGG
TCAAGTAAAGGATTTTGATGTGGAGGAGTTGAGCACCCTGGAAACCCGAG
TGCCAAGTCAGGAGGATATGCTGTGTCTAAGCGATTTGACTGCGCTTACG
ACTGGACTTCAAAGTGGCCAGTACTGGGCACTGAAAATGTTCGATTCCTG
GGGTTCAATACCATCTGGTCTACTAACGGGAAACATGTACGACCTGGGAA
ACTTCGACGAGTGCCTCAACATCAATCATGGAGTCAGCCTGGGCAGAACT
ATCCAGGGAAAGTACTGTTTTCTTTCAGTGTCTCTTGCCCAGGCGCTGGG
AGTCCAGAGTTCGATCATCGGCCATTTTAAAACTGCCACTTGCCTACCGG
CATCCTGCTCGGCAACTTATATGAACACGTTTATGGGTATGGTGACGAAA
CAACTGCTTAACGTCAGTATTCCCAGCTCGGTAATGAGTATCAGCGAATC
CAGTTGCCAAACAAGTGAAAGTGTACCATGGGACGGACTCACCATTTTTA
TGATAGTGATCTTATCGGTGATGGGCTCTTTAGTGGCTTTGTTTACCTTG
TGGGACTACTGTCTGGGAAAGAATCAGGACCAGCTTCCCACCATTGTAAA
GGTGTTTTCGGCCAGGGTCAACTCTCGTGCTCTATTTCGCATTGTAGAGG
TCAACTCTAGTCCAAATGTGATTGATTGCCTTCATGGAATTAGGTGCCTG
TCGCTCATGTGGGTTGTCTTCTGCCATCAATATGTTATGGCAGCTCTTGC
CTCAAATATCAACATTTTCCATGCCATATCGTGGGAGGAGACACCCTATG
CCAGTTTTATTCTGCACGGCTTTTTCTCCGTGGATTCGTTTTTCGTCCTC
GGCGGTCTATTAGTGGCTCTCATTCCGTTGCGTATGATGGATAGAACCAA
AGGTAAACTGAACGTGCCTTTGATGTACCTACATCGCTTGATCCGCATAG
TTCCCCTTTTGGCGATAGCCATTGTGATGTATTTGAAACTCATGCCCATC
GTAGCTGACGGACCTCGATTTGGCAGTGGGTACTCGGGAACAGTGGATTG
CGAAAATGGTTGGTATTGGACTTTGCTCTTCGTGAATAACTACACCGAAG
AAAAGTGTCTGGGTCATACTTGGTATCTGTCGGTGGACATGCAGCTGTTC
ATTCTATCGCCGATCATGCTGATCGCGCTCTACAAGTGGGGAAAGAAAGC
AGCTGCAGGCATTTTTGTCCTAATCGTTTTACTTTCCGGCTGTCTCTTCG
CCACCATAATGGTGAACAAGTACTCCTTGGTGCTTAAGAATTTTTCAATG
GATGCACAGAAGGATTTGTATTTTGCTACACATACCCATGCTACGCCTTG
GCTGACAGGATTTCTCTTTGGCTACAGTCTGCACTTGAACAGGGGAAAGA
AGTTCCAGCTTAGCAAGGTAGTTGCGTGGTCAGGATGGATCCTTTGCCTG
GCCATGATCTTCACCTCGATCTTTGCCCTCTACCCCTACGCCAAGTGGAC
GGGTCCAGATCTGTCCACCTTTGCGGAGGCTTCCTACTACACGCTCACTC
GTGTCGGCTGGTGCATGGCCCTCTGCTGGGTGATCTTCGCCTGCATGAAT
GGATACGGAGGACTGGCCAATAGTTTTCTCTCCTCCCCGCTTTGGCAACC
GCTCTCTAGACTATCCTATTCCGTCTACATGTGGCACATGTTCTTCCAGG
AAATCAATATCAGAAGTATGAGAACCAATTCATATTTCTCGAACTACACC
ATTATGCTCAACTTCTGGTCCACATTTGGATTTGCCGTGCTGTTTGCTTA
TGTGATGCACTTGGTAATTGAGGCGCCTTTTGGTGGTCTCGATTACTTCC
TGAGGCCAAAACAAAAAACTCCCCCTCTGGTTAAACAGAAATCCCAGATA
GATGACAACGGACACAATAACCTTGAGGAGCTCAAAGTAACGACTCCAAC
ACCTGCTGAAAATGCAAGCTTTCTAGACCAT
BO30184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10182-RA | 2100 | CG10182-PA | 1..2097 | 17..2113 | 10485 | 100 | Plus |
| CG13325-RD | 2094 | CG13325-PD | 199..1991 | 215..2010 | 1790 | 73.4 | Plus |
| CG13325-RC | 2094 | CG13325-PC | 199..1991 | 215..2010 | 1790 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10182-RA | 2212 | CG10182-RA | 25..2122 | 16..2113 | 10490 | 100 | Plus |
| CG13325-RD | 2415 | CG13325-RD | 222..2014 | 215..2010 | 1790 | 73.4 | Plus |
| CG13325-RC | 2181 | CG13325-RC | 222..2014 | 215..2010 | 1790 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23587488..23587953 | 1903..1438 | 2330 | 100 | Minus |
| 3R | 32079331 | 3R | 23589093..23589459 | 654..288 | 1835 | 100 | Minus |
| 3R | 32079331 | 3R | 23589524..23589795 | 287..16 | 1360 | 100 | Minus |
| 3R | 32079331 | 3R | 23588253..23588465 | 1255..1043 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 23587210..23587419 | 2113..1904 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 23588704..23588907 | 931..728 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 23588012..23588196 | 1438..1254 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 13125023..13125395 | 1474..1846 | 725 | 79.6 | Plus |
| 3R | 32079331 | 3R | 23588525..23588638 | 1044..931 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 23596865..23597243 | 1851..1473 | 440 | 74.4 | Minus |
| 2R | 25286936 | 2R | 13124762..13124908 | 1271..1417 | 375 | 83.7 | Plus |
| 3R | 32079331 | 3R | 23588968..23589041 | 728..655 | 370 | 100 | Minus |
| X | 23542271 | X | 19587772..19587894 | 1843..1721 | 315 | 83.7 | Minus |
| 3R | 32079331 | 3R | 23590503..23590669 | 1854..1688 | 310 | 79 | Minus |
| X | 23542271 | X | 19594924..19595046 | 1721..1843 | 300 | 82.9 | Plus |
| X | 23542271 | X | 19585474..19585625 | 1265..1416 | 265 | 78.3 | Plus |
| 3R | 32079331 | 3R | 23593982..23594358 | 1842..1466 | 235 | 70.8 | Minus |
| 3R | 32079331 | 3R | 23590995..23591158 | 1417..1254 | 205 | 75 | Minus |
| 3R | 32079331 | 3R | 23594541..23594641 | 1354..1254 | 205 | 80.2 | Minus |
| 2R | 25286936 | 2R | 13124045..13124178 | 731..864 | 205 | 76.9 | Plus |
| 2R | 25286936 | 2R | 13124301..13124413 | 931..1043 | 205 | 78.8 | Plus |
| 2R | 25286936 | 2R | 13124471..13124670 | 1046..1245 | 205 | 73.5 | Plus |
| 3R | 32079331 | 3R | 23598095..23598144 | 864..815 | 190 | 92 | Minus |
| X | 23542271 | X | 19585994..19586112 | 1721..1839 | 190 | 77.3 | Plus |
| 2L | 23513712 | 2L | 1228463..1228550 | 1254..1341 | 185 | 80.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:28:30 has no hits.
BO30184.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:19 Download gff for
BO30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 22..2118 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:48 Download gff for
BO30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 26..2122 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:00 Download gff for
BO30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10182-RA | 26..2122 | 17..2115 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:00 Download gff for
BO30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23588968..23589041 | 655..728 | 100 | <- | Minus |
| 3R | 23589093..23589459 | 288..654 | 100 | <- | Minus |
| 3R | 23589524..23589794 | 17..287 | 100 | | Minus |
| 3R | 23587208..23587419 | 1904..2115 | 99 | <- | Minus |
| 3R | 23587488..23587953 | 1438..1903 | 100 | <- | Minus |
| 3R | 23588013..23588194 | 1256..1437 | 100 | <- | Minus |
| 3R | 23588253..23588463 | 1045..1255 | 100 | <- | Minus |
| 3R | 23588525..23588637 | 932..1044 | 100 | <- | Minus |
| 3R | 23588704..23588906 | 729..931 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:48 Download gff for
BO30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19413735..19413916 | 1256..1437 | 100 | <- | Minus |
| arm_3R | 19413975..19414185 | 1045..1255 | 100 | <- | Minus |
| arm_3R | 19414247..19414359 | 932..1044 | 100 | <- | Minus |
| arm_3R | 19414426..19414628 | 729..931 | 100 | <- | Minus |
| arm_3R | 19414690..19414763 | 655..728 | 100 | <- | Minus |
| arm_3R | 19412930..19413141 | 1904..2115 | 99 | <- | Minus |
| arm_3R | 19413210..19413675 | 1438..1903 | 100 | <- | Minus |
| arm_3R | 19414815..19415181 | 288..654 | 100 | <- | Minus |
| arm_3R | 19415246..19415516 | 17..287 | 100 | | Minus |
BO30184.pep Sequence
Translation from 16 to 2131
> BO30184.pep
MVNIVGVVFLCGLGLISAGRLNDEDVLSDLQRVSQLKGLALDFVGQVKDF
DVEELSTLETRVPSQEDMLCLSDLTALTTGLQSGQYWALKMFDSWGSIPS
GLLTGNMYDLGNFDECLNINHGVSLGRTIQGKYCFLSVSLAQALGVQSSI
IGHFKTATCLPASCSATYMNTFMGMVTKQLLNVSIPSSVMSISESSCQTS
ESVPWDGLTIFMIVILSVMGSLVALFTLWDYCLGKNQDQLPTIVKVFSAR
VNSRALFRIVEVNSSPNVIDCLHGIRCLSLMWVVFCHQYVMAALASNINI
FHAISWEETPYASFILHGFFSVDSFFVLGGLLVALIPLRMMDRTKGKLNV
PLMYLHRLIRIVPLLAIAIVMYLKLMPIVADGPRFGSGYSGTVDCENGWY
WTLLFVNNYTEEKCLGHTWYLSVDMQLFILSPIMLIALYKWGKKAAAGIF
VLIVLLSGCLFATIMVNKYSLVLKNFSMDAQKDLYFATHTHATPWLTGFL
FGYSLHLNRGKKFQLSKVVAWSGWILCLAMIFTSIFALYPYAKWTGPDLS
TFAEASYYTLTRVGWCMALCWVIFACMNGYGGLANSFLSSPLWQPLSRLS
YSVYMWHMFFQEINIRSMRTNSYFSNYTIMLNFWSTFGFAVLFAYVMHLV
IEAPFGGLDYFLRPKQKTPPLVKQKSQIDDNGHNNLEELKVTTPTPAENA
SFLDH
BO30184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10182-PA | 699 | CG10182-PA | 1..699 | 1..699 | 3686 | 100 | Plus |
| CG13325-PD | 697 | CG13325-PD | 1..695 | 1..695 | 2518 | 67.1 | Plus |
| CG13325-PC | 697 | CG13325-PC | 1..695 | 1..695 | 2518 | 67.1 | Plus |
| CG13325-PB | 697 | CG13325-PB | 1..695 | 1..695 | 2518 | 67.1 | Plus |
| CG13325-PA | 697 | CG13325-PA | 1..695 | 1..695 | 2518 | 67.1 | Plus |
