Clone BO30189 Report

Search the DGRC for BO30189

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:301
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG9759-RA
Protein status:BO30189.pep: Imported from assembly
Sequenced Size:370

Clone Sequence Records

BO30189.complete Sequence

370 bp assembled on 2011-09-12

GenBank Submission: KX798269

> BO30189.complete
GAAGTTATCAGTCGACATGCGTATTTACCACCTGAATCTATTAGTGCTAA
GTGCCGGCCTACTGGTCCTGCTGGCCCAGTCGGGGACCACGGCCCCCCAG
GCGGATGAGGATGTACAGCAACTGACTCTGGCGGATGTAAATCAGGCGGA
GGAGCAGCAGGAGATGCCGGCTGTTCGCCTGGCCAGACAATTTGGATTCG
GCCGTGAAGGATTCGGCAGAGGACGCGGCGGATTCGGCGGATTTGGCGGA
AGGCGAGGCGGCGGTGGATTCCGGAGACCCGGTTTCGGTGGCGGTGGATT
CGGCGGATTCTACCCACCGCCACCGCCCTTCTTCGGCGGCCCCTTTTACG
GCGCAAGCTTTCTAGACCAT

BO30189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9759-RB 339 CG9759-PB 1..336 17..352 1680 100 Plus
CG9759-RC 339 CG9759-PC 1..336 17..352 1680 100 Plus
CG9759-RA 339 CG9759-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9759-RB 1122 CG9759-RB 49..384 17..352 1680 100 Plus
CG9759-RC 1877 CG9759-RC 49..384 17..352 1680 100 Plus
CG9759-RA 494 CG9759-RA 49..384 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13608863..13609198 352..17 1680 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:10:23 has no hits.

BO30189.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:38 Download gff for BO30189.complete
Subject Subject Range Query Range Percent Splice Strand
CG9759-RA 49..384 17..354 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:36 Download gff for BO30189.complete
Subject Subject Range Query Range Percent Splice Strand
CG9759-RA 49..384 17..354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:49 Download gff for BO30189.complete
Subject Subject Range Query Range Percent Splice Strand
CG9759-RA 49..384 17..354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:49 Download gff for BO30189.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13608861..13609198 17..354 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:36 Download gff for BO30189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9434583..9434920 17..354 99   Minus

BO30189.pep Sequence

Translation from 16 to 370

> BO30189.pep
MRIYHLNLLVLSAGLLVLLAQSGTTAPQADEDVQQLTLADVNQAEEQQEM
PAVRLARQFGFGREGFGRGRGGFGGFGGRRGGGGFRRPGFGGGGFGGFYP
PPPPFFGGPFYGASFLDH

BO30189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9759-PB 112 CG9759-PB 1..112 1..112 604 100 Plus
CG9759-PC 112 CG9759-PC 1..112 1..112 604 100 Plus
CG9759-PA 112 CG9759-PA 1..112 1..112 604 100 Plus
CG17738-PA 110 CG17738-PA 8..104 14..115 139 41.7 Plus